AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Busi8g00384 ATGCGAGTAAAAGAAATGCATCCTTTGTGTTGCATCTCCTTGGAGGGCCCAGGGATCGGATGCAGATCGCCGGAGGTCTTAACCATGAGAAGCGGTCTGATCGCTGGTTCTGCTGCGGCCTCCGGCGGATCTGACGGCAATGCTGGTCGAGAAATGGGATCTGACGTTAATGTCGCTGGAGTTCTGTACAAATGGACCAATTACGGGAAAGGATGGAGATCTCGATGGTTTTTGTTGAGAAACGGCGTTCTTTCGTATACGAAGATTCGACGATCGGAGAATGTCAGTATCTCGTTGACGAGCGACGAGTTTCGATTGATTGGCGATGCTTCGTCCGGTCGACTCTCGCGTCTCGACAGCGGTGGGAGAAGGAAGCAACAGAAAACAGTTCGCATCGTTCATCTCAAGGTCTCATCATTTCGTGAGAGTAGATCAGATGATAGAAAATTTTATGTTTTTACTGCCACGAAGACACTTCATCTAAGAACTGATTCAAAGTGTGATCGTGCTGCTTGGATAAATGCTTTAGTCACTTGTCGTAGCCTAATTTCTTTGAGACCACTGAATGACAAGTTTGCATTTGCCCCAAATGATATATCAGTGTCGACTGAACGGCTTAGAAGTCGTTTGCATGAAGAGGGAATCGATGGAGAACTTGTCTGTGAATGTGAGCAGATCATGTTATCAGAATTCTCAGAAATTCATGGAAAAATCAAAGCTCTTTGTGAAGAACGATCCAATTTGCTTGACACGTTAAGGCAGTTGGAGGCAGCTAATATTGAAGTTGATCCCAATGGACTGCATGACACCCAATTCAGACTGAAGAAGAGTGAATTTTCAAGCAATGGATGTGGAAAATATAGTGAATGCAGCACAACTGAATCATCTGATGATATTGACAAGCAAGAGGTTGAGGAAGTGTCAGATGAAGATCCACTTTCATTCTTTGATGCGAAAGAAAATTTTGGTGATTCCAGTTACCATGGTGGATTTGTTATAGGAGGTCCAAGCCCTGTTGAGAAGTTCAAACATGAAAATCAATGTGACATGGGGGAGCAGATGCATATAGAAAGACAAGATACTAATTGTAAGTCTCTGAAAATTATGAGGCGAAAGAAACTTCCTGACCCTATCGAGAAAGAGAAAGGTGTCAGCCTTTGGTCGATCATAAAAGACAATGTTGGAAAGGATCTTACACGTGTGTGTCTCCCTGTTTACTTCAATGAGCCGATATCATCCCTTCAGAAATGCTTTGAGGAATTAGAGTATTCATTTCTTCTGGATCGGGCATATGAGTATGGAAAATTGGGCAACAACCTGCTAAGAATTCTGAATGTAGCTGCCTTTGCCATCTCTGGTTATGCTTCAACTGAAGGTCGACACTGTAAACCCTTTAATCCGTTGTTAGGGGAAACGTATGAGGCGGACTACCCGGAGAAAGGGATTCGATTTTTCTCTGAGAAGGTTAGCCACCACCCTACGCAGATAGCCTTCCATTGTGAAGGCAAAGGGTGGAAACTCTGGGGTGACAGCAACCTGAGAAGTAAATTTTGGGGGCGGTCAATTCAGCTTGAGCCTCTTGGTGTTCTGACCCTGGAGTTTGATGATGGTGAGATTTTCCAGTGGAGTAAGGTCACAACATCGATTTATAATCTTATCCTTGGTAAATTATATTGTGATCACCACGGGACAATGCATATACATGGTAATGGTCCATATACATGCAAACTTAAATTCAAGGAGCAATCCATTCTTGATCGAAATCCTCACCAGGTACATGGATATGTTGAAGACATCACCGGAAAAAAGTTTGCCACTTTATTTGGGACGTGGAATGATAGTATGTGTTATATCAGTGGAGATGGAGCTGGAAAAACAATGAGTTCTAATACATCGGATGCTTCTGTATTATGGAAAAGGAATAAACCAACTCCTAATCTCACCCGGTACAACTTGACATCATTTGCAGTTGCACTAAATGAGATAACATCAGGGCTTCAGGTAGAGACTGTGTTGATGTTTGATAACGGATTAAGGAGAAGCTACCGCCCACGGACTCAAGGCTTAGACCGGACCAGCGACATCTGGAGAATGGAGGAATATGAGAAGGCAAATGCAGAGAAGTTACGGCTGGAGAGGAGGCAAAGGATGTCCAGGAAATTACAGGAAAATGGCTGGAAGCCAAGATGGTTCCAAAAGGCTGGGGAGGATGAGCCTTACCGCTATGCTGGTGGATACTGGGAGGCACGTGAACAGAGAAAGTGGGATCAATGCCCGGATATATTTGGTGAATTTAATGAGGACCTGCTTGTCAATGTCTGA 2322 43.8 MRVKEMHPLCCISLEGPGIGCRSPEVLTMRSGLIAGSAAASGGSDGNAGREMGSDVNVAGVLYKWTNYGKGWRSRWFLLRNGVLSYTKIRRSENVSISLTSDEFRLIGDASSGRLSRLDSGGRRKQQKTVRIVHLKVSSFRESRSDDRKFYVFTATKTLHLRTDSKCDRAAWINALVTCRSLISLRPLNDKFAFAPNDISVSTERLRSRLHEEGIDGELVCECEQIMLSEFSEIHGKIKALCEERSNLLDTLRQLEAANIEVDPNGLHDTQFRLKKSEFSSNGCGKYSECSTTESSDDIDKQEVEEVSDEDPLSFFDAKENFGDSSYHGGFVIGGPSPVEKFKHENQCDMGEQMHIERQDTNCKSLKIMRRKKLPDPIEKEKGVSLWSIIKDNVGKDLTRVCLPVYFNEPISSLQKCFEELEYSFLLDRAYEYGKLGNNLLRILNVAAFAISGYASTEGRHCKPFNPLLGETYEADYPEKGIRFFSEKVSHHPTQIAFHCEGKGWKLWGDSNLRSKFWGRSIQLEPLGVLTLEFDDGEIFQWSKVTTSIYNLILGKLYCDHHGTMHIHGNGPYTCKLKFKEQSILDRNPHQVHGYVEDITGKKFATLFGTWNDSMCYISGDGAGKTMSSNTSDASVLWKRNKPTPNLTRYNLTSFAVALNEITSGLQVETVLMFDNGLRRSYRPRTQGLDRTSDIWRMEEYEKANAEKLRLERRQRMSRKLQENGWKPRWFQKAGEDEPYRYAGGYWEAREQRKWDQCPDIFGEFNEDLLVNV 773
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Busi8g00384 773 Pfam Oxysterol-binding protein 385 751 IPR000648 GO:0008289(InterPro)
Busi8g00384 773 SUPERFAMILY PH domain-like 54 179 - -
Busi8g00384 773 SMART PH-update 56 183 IPR001849 -
Busi8g00384 773 Gene3D - 52 183 IPR011993 -
Busi8g00384 773 Pfam Pleckstrin homology domain 63 176 - -
Busi8g00384 773 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 58 738 IPR000648 GO:0005829(PANTHER)|GO:0008289(InterPro)|GO:0015248(PANTHER)|GO:0016020(PANTHER)|GO:0032934(PANTHER)|GO:0043231(PANTHER)
Busi8g00384 773 Coils Coil 238 258 - -
Busi8g00384 773 ProSiteProfiles PH domain profile. 55 181 IPR001849 -
Busi8g00384 773 FunFam Oxysterol-binding protein-related protein 2A 697 764 - -
Busi8g00384 773 SUPERFAMILY Oxysterol-binding protein-like 380 765 IPR037239 -
Busi8g00384 773 Gene3D - 471 646 - -
Busi8g00384 773 FunFam Oxysterol-binding protein-related protein 2A 471 642 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Busi8g00384 K20456 oxysterol-binding protein 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Busi Busi-Chr14:2957049 Busi8g00384 Busi-Chr8:5289325 dispersed
Busi Busi-Chr14:3056364 Busi8g00384 Busi-Chr8:5289325 dispersed
Busi Busi-Chr5:15269521 Busi8g00384 Busi-Chr8:5289325 dispersed
Busi Busi-Chr7:22523822 Busi8g00384 Busi-Chr8:5289325 dispersed
Busi Busi-Chr7:22540386 Busi8g00384 Busi-Chr8:5289325 dispersed
Busi Busi-Chr8:5289325 Busi9g02269 Busi-Chr9:54640393 dispersed
Busi Busi-Chr8:5289325 Busi11g00310 Busi-Chr11:20918516 transposed