AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Busi8g00385 ATGGGTACTGGAGATCTTCTCAACATTCAACCTTCAGAACTCAAATTTCCCTTCGAATTGAAGAAGCAAAGCTCATGTTCTATGCAATTAACCAACAAGACTGATCAATATGTAGCCTTCAAGGTCAAAACAACCAACCCCAAAAAGTATTGTGTGCGTCCCAACACCGGAATAGTGTTGCCTGGGGCGTCATGCGATGTTACAGTTACTATGCAAGCCCAAAAGGAGGCCCCACCTGATATGCAGTGTAAAGATAAGTTCCTCCTTCAGAGTGTTGTTGCACCTCTTGGTGCAACTACAAAGGATATAACACCAGAGATGTTTAACAAAGAGGATGGAAGGGTTGTTGAGGAATTCAAATTGAGAGTGGTTTACATCCCTGCTAATCCACCCTCACCAGTGCCTGAAGGATCTGAAGAAGGAACTTCACCTAGGGCATCTGTGCTTGAGAATGGGAACCAAAACACCACACTTTTTGATGCTGTAACAAGATCCGTAGAGGAGCCGAACGAGAAGTCTTCTGAGGGATGGTCGATGATTTCCAAGTTGACTGAGGAGAAAAGTTCTGCTATCCAACAAAATCAGAAACTCCGCCAAGAGTTGGAATTGATGAGAAAAGAGATTAGCAAAAAGCGTGCTGGTGGTTTCTCCTTCTTATTTGTGGTACTAGTTGGCCTCCTGGGTGTTCTGGTTGGTTACCTTGTTAAGAAAACA 714 43.84 MGTGDLLNIQPSELKFPFELKKQSSCSMQLTNKTDQYVAFKVKTTNPKKYCVRPNTGIVLPGASCDVTVTMQAQKEAPPDMQCKDKFLLQSVVAPLGATTKDITPEMFNKEDGRVVEEFKLRVVYIPANPPSPVPEGSEEGTSPRASVLENGNQNTTLFDAVTRSVEEPNEKSSEGWSMISKLTEEKSSAIQQNQKLRQELELMRKEISKKRAGGFSFLFVVLVGLLGVLVGYLVKKT 238
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Busi8g00385 238 Gene3D Immunoglobulins 3 129 IPR013783 -
Busi8g00385 238 PIRSF VAMP-assoc-prot 1 237 IPR016763 GO:0005789(InterPro)
Busi8g00385 238 SUPERFAMILY PapD-like 3 138 IPR008962 -
Busi8g00385 238 Coils Coil 180 214 - -
Busi8g00385 238 FunFam Vesicle-associated protein 1-1 1 129 - -
Busi8g00385 238 MobiDBLite consensus disorder prediction 130 153 - -
Busi8g00385 238 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 6 235 IPR016763 GO:0005789(PANTHER)|GO:0005789(InterPro)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
Busi8g00385 238 Pfam MSP (Major sperm protein) domain 7 109 IPR000535 -
Busi8g00385 238 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Busi8g00385 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Busi Busi-Chr12:16454013 Busi8g00385 Busi-Chr8:5311649 dispersed
Busi Busi-Chr12:30075803 Busi8g00385 Busi-Chr8:5311649 dispersed
Busi Busi-Chr7:22549979 Busi8g00385 Busi-Chr8:5311649 dispersed
Busi Busi-Chr8:5311649 Busi8g00402 Busi-Chr8:5570151 dispersed
Busi Busi-Chr8:5311649 Busi6g00350 Busi-Chr6:3399959 transposed