AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Busi8g00412 ATGAAATTTGGGAAGAGGCTGAAACACCAAATGCAGGAGACGCTGCCGGAATGGCGGGACAAGTTTGTCTCGTACAAGGATTTGAAGAAGCTTGTTAGGCTTATCTCCTCTATGCCTCCGTCTTTAGAGGGAACAATTGAGTCCGGTAAGGCCGAAGCAGAGTTCGTGTACTTGTTGAACAATGAGATTGATAAGTTCAATGCCTTCTTCATGGAGCAGGAGGAGGACTTCATAATCCAACATAAAGAGTTACAACAGAGAATCCAAATGGTTTTCAACAGGTGGGGGCCAAATGGGAGTGAGCCTTCAGAGGTCAATTATAGGGAAGAGATGGGAAAGATTAGGAAAGACATAGTTGATTTCCACGGTGAAATGGTGCTCTTGGAGAACTATAGCAATATCAATTACACAGGATTGGCTAAGATCTTAAAGAAGTATGACAAGCGAACGGGCGGTTTATTGCGCTTGCCATTCATTCAAAAAGTGTTGCAGCAGCCCTTCTTTACAACTGATCTTCTATCAAAGCTTGTTAAAGAATGTGAAAGCACCATTGATGCAGTATTCCCAGTTGCTGCAACAGAAGGGAACACAAGAGAAGAAAAAGGAGAAAGAGAAGCAATAGCTATAGCTGGACACAGCATTTTCAGGAACACGGTTGCCGCGCTTGTGACCATGCAAGAGATGAGGACGAGGAGTTCTACTTACAGTCAATTTTCTCTTCCTCCTCTTAACTTGCCAGACTCTGATCTCATTCAATCCTTGCAGCATCCATCTCTCATTCCCATCCTTTAG 792 43.69 MKFGKRLKHQMQETLPEWRDKFVSYKDLKKLVRLISSMPPSLEGTIESGKAEAEFVYLLNNEIDKFNAFFMEQEEDFIIQHKELQQRIQMVFNRWGPNGSEPSEVNYREEMGKIRKDIVDFHGEMVLLENYSNINYTGLAKILKKYDKRTGGLLRLPFIQKVLQQPFFTTDLLSKLVKECESTIDAVFPVAATEGNTREEKGEREAIAIAGHSIFRNTVAALVTMQEMRTRSSTYSQFSLPPLNLPDSDLIQSLQHPSLIPIL 263
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Busi8g00412 263 CDD SPX-AtSPX1-like 2 149 - -
Busi8g00412 263 Pfam SPX domain 1 33 IPR004331 -
Busi8g00412 263 Pfam SPX domain 101 161 IPR004331 -
Busi8g00412 263 PANTHER SPX DOMAIN-CONTAINING PROTEIN 3 1 250 IPR031142 GO:0016036(InterPro)
Busi8g00412 263 ProSiteProfiles SPX domain profile. 1 160 IPR004331 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Busi8g00412 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Busi Busi-Chr13:29538792 Busi8g00412 Busi-Chr8:5618840 dispersed
Busi Busi-Chr6:144097 Busi8g00412 Busi-Chr8:5618840 dispersed
Busi Busi-Chr6:99245 Busi8g00412 Busi-Chr8:5618840 dispersed
Busi Busi-Chr7:6136411 Busi8g00412 Busi-Chr8:5618840 dispersed
Busi Busi-Chr12:27806571 Busi8g00412 Busi-Chr8:5618840 transposed
Busi Busi-Chr12:29771375 Busi8g00412 Busi-Chr8:5618840 wgd