AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Busi8g00427 ATGTCATTTTTACCAGAGGAGAACCCTAAGCCATTGAAGAGACCTCCGAGCTGGCCTGACCTCTGGTTCAACGATAAAGCTCTTAAGCATGTGGTTTTCAAGATGCAGCTCCAGTCCCTCGCTCAAGCAGAGCAAGATAAGGTTGCAGCTAAACCAGGCGAAAACCTTGCTTTCGATTCCTCGAAGAGAGACCTGACCTCTCTGTTATCCGACGTGATTCTGCTTCGAATCTTCTCCAAGCTACCGGACTCGCAACGGAACGCCAACTCGCTTGTTTGCAAGCGATGGTTGATTCTGCAAGGTTGCTTGACTGGGATTTCCTTCAATCCGGTCGGCTTGTTTCTCGGTTCCCCAAATTTGACCGATGTTGATCTCGTGCGCGCCTGCATTGGTTCGCCGAGAAATTCTGGAATCTTGTTGACGCATAAATTGATATCGGTTCATCTTGATTCTCGTTTTTCTTCTGCGGGATTTATTCGTGACGAGAATTTACTGTCGTCGGATTCGATTGATCGAGGGCTCCGAGTTCTCGCTCGTGGATGCCCTAATTTACGAAAACTTTCTCTCATTGGTGCGACTGGATCAGGTTTGTCGAGTGTGGCGGAGGAGTGTCCGACGCTGCAGGAATTGGAGCTGCATCGTTGCACGGATCTCGCCTTGCGCGGGATTGCTGCATGCGAGAACCTCCAGATCTTGAAATTGATTGGCACAGTGGATGGTTTTTATAGTTCTGTCATCTCTGATATTGGTTTGACAATCCTAGCTCAGGGTTGTAAACGGTTGGTGAAGCTTGAGCTGAATGGATGTGAGGGAAGCTATGATGGGATCAAAGCGATTGGACAATGCTGCCAAATGCTGGAGGAGCTCACGCTTTATGATCACAGGATGGATGATGGGTGGATGGCAGGTCTTTCATTCTGTGGGAATTTGAAGACTTTGAAGCTTCAGTCGTGCAAGCGTATTGATCCAAACCCAGGACCTGATGAGTATTTGGGTTCTTGCCCAACTCTTGAGCGCTTACATCTGCAGCAGTGCCAAATTAGGAACAAGATGAGTATGAAAGCATTGTTTCTAGTATGTGGGGCTGTCAGGGAGATTGTCTTTCAGGATTGTTGGGGATTGGACAACGATATGTTTAGTGTTGCAAGTTCTTGCAGGAGGGTTAAATATCTATCTTTAGAAGGATGTTCATTGCTAACCACAGAAGGCCTAGAATCGGTAGTTCTTTCTTGGAAAGAGATTCAAAGACTTAGAGTAGTGTCATGTAACAGTATCAAGGACAGTGAAGTCACTCCTGCACTGTCTACCTTGTTTTCTGTTCTTAAGGAGTTTCAGTGGCGGCCAGATTCCCGATCTGTTCTCTCATCAAGTCTTGTAGAGACAGGGATGGGAAAGAAAGAACTTTCACGTGGCAGCTGCAAAAGGTCTTCCGTAAATGATCTCTCATCAATCTTGATATGCCAGAGTCACCAGCATAAGCAGTCATCTCCTGTTCAAGAAGAATATTACATGATTTCAGATCAAGGTGCACAATTTCTGCATTTGAGTAGCGAGATTCACAGTAACTCGAGGAATCTCTCCATCACAGTGTTGCTCCAGCATATTTGGGATCTCCAGAACCTGATGGAACTTGGCGTGCAAGTTAAGAAGCCTGAGAACCAGAGTGGCACCAATATGTTTGTTTGCTCTGAGATTCAAATTATTGAGGCTCAGAAAAGTGACCTAGTTCATCAAGAATGCTTCTTTCTAAAGTGTTTGCAATTTTGGAAGCTTTTGTCTGTTGACAATGGCCAAGACTAG 1800 45.72 MSFLPEENPKPLKRPPSWPDLWFNDKALKHVVFKMQLQSLAQAEQDKVAAKPGENLAFDSSKRDLTSLLSDVILLRIFSKLPDSQRNANSLVCKRWLILQGCLTGISFNPVGLFLGSPNLTDVDLVRACIGSPRNSGILLTHKLISVHLDSRFSSAGFIRDENLLSSDSIDRGLRVLARGCPNLRKLSLIGATGSGLSSVAEECPTLQELELHRCTDLALRGIAACENLQILKLIGTVDGFYSSVISDIGLTILAQGCKRLVKLELNGCEGSYDGIKAIGQCCQMLEELTLYDHRMDDGWMAGLSFCGNLKTLKLQSCKRIDPNPGPDEYLGSCPTLERLHLQQCQIRNKMSMKALFLVCGAVREIVFQDCWGLDNDMFSVASSCRRVKYLSLEGCSLLTTEGLESVVLSWKEIQRLRVVSCNSIKDSEVTPALSTLFSVLKEFQWRPDSRSVLSSSLVETGMGKKELSRGSCKRSSVNDLSSILICQSHQHKQSSPVQEEYYMISDQGAQFLHLSSEIHSNSRNLSITVLLQHIWDLQNLMELGVQVKKPENQSGTNMFVCSEIQIIEAQKSDLVHQECFFLKCLQFWKLLSVDNGQD 599
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Busi8g00427 599 Gene3D - 64 101 - -
Busi8g00427 599 SUPERFAMILY RNI-like 244 428 - -
Busi8g00427 599 Gene3D Ribonuclease Inhibitor 128 238 IPR032675 -
Busi8g00427 599 Gene3D Ribonuclease Inhibitor 239 325 IPR032675 -
Busi8g00427 599 SUPERFAMILY RNI-like 96 237 - -
Busi8g00427 599 FunFam Uncharacterized protein 239 328 - -
Busi8g00427 599 CDD F-box-AtTIR1-like 67 101 - -
Busi8g00427 599 PANTHER UNCHARACTERIZED 67 468 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
Busi8g00427 599 SMART LRR-CC-2 181 203 IPR006553 -
Busi8g00427 599 SMART LRR-CC-2 204 226 IPR006553 -
Busi8g00427 599 SMART LRR-CC-2 258 282 IPR006553 -
Busi8g00427 599 SMART LRR-CC-2 385 410 IPR006553 -
Busi8g00427 599 Gene3D Ribonuclease Inhibitor 326 544 IPR032675 -
Busi8g00427 599 SUPERFAMILY F-box domain 62 98 IPR036047 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Busi8g00427 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Busi Busi-Chr8:5816224 Busi9g00863 Busi-Chr9:8811020 dispersed
Busi Busi-Chr12:29619103 Busi8g00427 Busi-Chr8:5816224 wgd