AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Busi8g00438 ATGTCGGAACTGAAGAGGTACTTCCACCGATTCGGTTATCTCCCCTTACACAATACGAATTTCACCGATATATTCGATGCCCGGCTCGAAAAGGCCGTGTTCCGGTACCAAACCAAGCTCGGCCTTCGCCTCACCGGAAAGCTCGATTCCGACACCCTTTCGCAGATCATGATGCCCCGGTGCGGCGTAAGCGACGCGGTGCACAAGTTCCATTCAACACGTCACTTCGCGTACTTTCCCGGTCAGCCGAGATGGGCTCGCTCGAAGCCGATGAGGCTTACTTATGCGTTTTCGCCGGAGAATTTAGTCGGGTATTTGAGCTTCTCGGCCATGAGAGCTGTGTTTCGCCGGTCGTTTACGAGGTGGGCGTCCGTTATTCCGGTGAATTTCTCGGAGACGGAGGATTACCGATCGGCCGATATCAAAATCGGGTTTTACGGTGGGGATCACGGCGACGGAGTGCCGTTTGATGGGGTGCTCGGAGTGCTTGCGCACGCTTTCTCGCCGGAAAACGGGAGGTTCCATCTAGACGCGTCGGAAACGTGGGCCGTTGATTTTGGGTCAGAGAAATCAAAGGTGGCCGTTGATTTAGAATCGGTGGTGACTCATGAAATTGGGCATGTACTGGGTCTGGCCCACTCTTCGGTTAAGGAAGCTGTGATGTATCCAAGCTTGAGCCCTAGAACTAAGAAGGTGGACTTGAAGCTTGATGATGTAGAAGGCGTGCAAGCTCTTTATGGCTCAAACCCTAATTTCAAATTCAGCTCTTTGTTGGAGTCTGATACTTCTTCAAATGATGCCGTTGATTTAATCAAATCTTCTAAGTGGGCCATTCCTATGGCAGTTTTAATACTGTGTTTGTGCATATAG 870 50.92 MSELKRYFHRFGYLPLHNTNFTDIFDARLEKAVFRYQTKLGLRLTGKLDSDTLSQIMMPRCGVSDAVHKFHSTRHFAYFPGQPRWARSKPMRLTYAFSPENLVGYLSFSAMRAVFRRSFTRWASVIPVNFSETEDYRSADIKIGFYGGDHGDGVPFDGVLGVLAHAFSPENGRFHLDASETWAVDFGSEKSKVAVDLESVVTHEIGHVLGLAHSSVKEAVMYPSLSPRTKKVDLKLDDVEGVQALYGSNPNFKFSSLLESDTSSNDAVDLIKSSKWAIPMAVLILCLCI 289
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Busi8g00438 289 SMART col-5 81 248 IPR006026 GO:0006508(InterPro)|GO:0008237(InterPro)|GO:0008270(InterPro)
Busi8g00438 289 Pfam Putative peptidoglycan binding domain 2 55 IPR002477 -
Busi8g00438 289 SUPERFAMILY PGBD-like 3 65 IPR036365 -
Busi8g00438 289 Pfam Matrixin 85 247 IPR001818 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)|GO:0031012(InterPro)
Busi8g00438 289 CDD ZnMc-MMP 84 247 IPR033739 GO:0008237(InterPro)|GO:0008270(InterPro)
Busi8g00438 289 PANTHER MATRIX METALLOPROTEINASE 4 259 - GO:0004222(PANTHER)|GO:0030198(PANTHER)|GO:0030574(PANTHER)
Busi8g00438 289 SUPERFAMILY Metalloproteases (zincins), catalytic domain 77 250 - -
Busi8g00438 289 FunFam Metalloendoproteinase 1 1 252 - -
Busi8g00438 289 Gene3D Collagenase (Catalytic Domain) 1 253 IPR024079 GO:0008237(InterPro)
Busi8g00438 289 PRINTS Matrixin signature 56 69 IPR021190 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Busi8g00438 289 PRINTS Matrixin signature 200 225 IPR021190 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Busi8g00438 289 PRINTS Matrixin signature 139 167 IPR021190 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Busi8g00438 289 PRINTS Matrixin signature 115 130 IPR021190 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Busi8g00438 289 PRINTS Matrixin signature 234 247 IPR021190 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Busi8g00438 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Busi Busi-Chr8:5978107 Busi3g00672 Busi-Chr3:6941468 transposed