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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Busi8g00452 ATGCTGGAGTATGCATGGGGAAACCCATCTCCGATCTTACTCTCCGAGAAGAATCCATACGGGACTCCGAACAAACTCGTCAGATTCTCGACCAGTACTACAGCCAATCTCTGCCCAGAAACCTCCTTACAACTGCGAACGCGTTCTCCCCTGGACACCATTTTCAACAACAGGAACATCAGAAACCAAACCCATTTCCAGTCTCTCCATGACTCGCGGGCTCACAGTTTCTCATACCTACCTCCACCAATGACGAGTCTCGTGCCAGAACATGTCTCCAATAACTCTGACTTCATGTCACAAAGAGCGAAGAAGTCTCTGGCTCAGTGGAGTAGATTTCCATGGCAGAATTGGATTAAATTTGGTGTTCGGACGTATTTCTCTTCGGAGGAAGACTTCGTGAACCGGATGTTCCGCCGCTCCAGACTGGCTGACGCTTGTCCGTCGAAATCACGAGGTGTCAGTCGGAGGGCTGCGAACGCCGATCTGAGTCACGGTAAGCGTTATCACCGGCGTCATAAGGTCTGCGAGTTTCACTCCAAGGCCTCTACTGTGTTCGTCGGAGGTCTCTGCCAACGATTCTGCCAACAATGCAGCAGGTTCCATCTTCTCTCGGAATTTGATCAAGGGAAGCGTAGCTGCAGAAGGCGTTTGGCCGATCATAACCGTCGAAGGAGAAAATCCCAGCCACAGCAGCAACGGCAAAAACAACGAACTCAGGATCAGCAGCAGTTGCAGCTCGAAAGCAATCTTAGTTCTCCATCTGAAAACACAGGAAGTAGGCTGCAGCTGGAATTCTCCGAGGTCGTCTCCGGAGTCCGGAGCCCATTCGTCATCGTCGGTAACGGTCACAGCGTCTCCACCGAGAATGACATTATTGGGTTCGAGAGAGTATATCGCTTCATCTCCTTTCTCGTCGTCAAGCTCACACTTTTTCTCAGATCGTCAGATCGGATCCCCAGCTTGAACTGGGACGAAGAAGAAGATGAAAGATGA 996 50.8 MLEYAWGNPSPILLSEKNPYGTPNKLVRFSTSTTANLCPETSLQLRTRSPLDTIFNNRNIRNQTHFQSLHDSRAHSFSYLPPPMTSLVPEHVSNNSDFMSQRAKKSLAQWSRFPWQNWIKFGVRTYFSSEEDFVNRMFRRSRLADACPSKSRGVSRRAANADLSHGKRYHRRHKVCEFHSKASTVFVGGLCQRFCQQCSRFHLLSEFDQGKRSCRRRLADHNRRRRKSQPQQQRQKQRTQDQQQLQLESNLSSPSENTGSRLQLEFSEVVSGVRSPFVIVGNGHSVSTENDIIGFERVYRFISFLVVKLTLFLRSSDRIPSLNWDEEEDER 331
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Busi8g00452 331 MobiDBLite consensus disorder prediction 219 258 - -
Busi8g00452 331 Gene3D - 157 215 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Busi8g00452 331 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 87 253 IPR044817 GO:0003677(InterPro)
Busi8g00452 331 SUPERFAMILY SBT domain 160 232 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Busi8g00452 331 ProSiteProfiles Zinc finger SBP-type profile. 151 228 IPR004333 GO:0003677(InterPro)
Busi8g00452 331 MobiDBLite consensus disorder prediction 233 258 - -
Busi8g00452 331 Pfam SBP domain 159 227 IPR004333 GO:0003677(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Busi8g00452 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Busi Busi-Chr7:21440624 Busi8g00452 Busi-Chr8:5990597 dispersed
Busi Busi-Chr8:5990597 Busi9g01819 Busi-Chr9:30040384 dispersed
Busi Busi-Chr12:29473060 Busi8g00452 Busi-Chr8:5990597 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Busi10g00501 . 42 174 SBP-box gene family AT1G53160 56.204 8.26e-45 144.0
Busi11g02053 . 1 1033 SBP-box gene family AT1G20980 48.854 0.0 923.0
Busi12g00598 . 1 229 SBP-box gene family AT1G02065 44.915 4.65e-45 154.0
Busi13g00163 . 1 320 SBP-box gene family AT5G43270 40.782 1.78e-67 216.0
Busi14g00119 . 1 174 SBP-box gene family AT5G50670 47.191 3.25e-33 123.0
Busi14g00970 . 118 239 SBP-box gene family AT1G69170 58.197 1.80e-39 145.0
Busi1g01727 . 27 106 SBP-box gene family AT3G57920 48.571 2.26e-22 96.3
Busi2g00403 . 103 173 SBP-box gene family AT1G53160 56.0 5.30e-16 75.5
Busi3g00183 . 1 343 SBP-box gene family AT5G50670 38.338 4.77e-54 181.0
Busi4g00584 . 40 174 SBP-box gene family AT1G53160 50.725 6.01e-35 119.0
Busi5g00997 . 15 794 SBP-box gene family AT5G18830 44.095 0.0 615.0
Busi6g00041 . 1 880 SBP-box gene family AT2G47070 49.073 0.0 868.0
Busi7g01256 . 1 409 SBP-box gene family AT5G43270 39.387 4.91e-79 250.0
Busi8g00452 . 149 261 SBP-box gene family AT1G02065 67.257 3.65e-45 155.0
Busi9g01819 . 1 1033 SBP-box gene family AT1G20980 47.096 0.0 883.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Busi SBP 1e-25 No_clan TF SBP