AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Busi8g00474 | GATGCAACAGGCACCCCTCTTTGGCGAAATGGACCGCCAGATAAGCCAGTACTCTGCAATGCATGTGGATCCCGATGGAGAACAAAAGGAACACTTGCAAATTACACCCCACTACATGTTCGGGTAGAACCTGATGAGCTTGAAGATTACAGAGTTTCCAAAGTGAAAAGCTCATCAATCAGGATCAAAGAGGCAAAATTGCAGAAAAGAAAACAAATTCATGATAACATAGTAGTTCAAGGGTACAAACCAGAGTATGATATAAATTTCGAGAAGGTTTCAGAGGATGATTCAAGTCATAGATCTAGTTCTGGGTCAACTATATCTCACACTGAGGGCTGTGCACAATATGGTGGCATAGATGCTAGAGATTTTGCAGGTTCAGCTCAATCTGTCTTATGGGATACAATTGTGCCATCGAGGAAGAGGACTTGTGTAAGTAACCCAAGGCCATCTCCAATTGAGAAGCTTACAAAAGATCTACATTGCATTCTGCATGAGCAACAGTCGTCATACTTATCTGGATCTTCAGAAGAAGACTTGCTGTTTGAGAGTGAGACACCATGGATGGACTCTGTTGAGATGGGTCATGGAAGTGTTCTTATTAGGCACCCAAACTCAGGTGTGCAAGAGGAGGAATCTGAAGCTAGTTCTTTCTCTATGGACAACAAAAGACACCTAGCAAATGAGATTCACTTGGGTTCTGCAGCCATTGCTTCAAATACTGATGATAGAGATGTCAGTTTTCCAAGTCTCAGCCTGGACAAACTTAAGAAGCCTACTGAACCAGGAACTCAGCATGAGCTCATGGAAAGGAATAAGTCTCAAAATGAAATGTTACATATTCTGCAAAATCATAATTCTCCATTGAGATGCATAGATCTAAAAATATATTATATATTCAGCCTTGAAAGCATGTTTGACAACCCTCAGTTTGAAGAGAGCCTGTCTTCCTTTCATGAGCTGCTTGCAGAAGGAACATTTGATCCCTCTTTCTTAGGAGCAAATGTGGAGGACTATAAGACTCTGAAGAGGATTGCATTAACCAATTTGACAGAATCTAAGTGGATTGAACACTATAATCTACTCAAGGATGTGAAACATGAAAAAGCTACAGAAGGGAAGGCACTGGAGGACCTAATGTCCTTGCATCAAGTAATAAAGTACCCATCAAGAGGCCATTTGATGGACATAGTCAAAACTTTTCAG | 1209 | 40.94 | DATGTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHVRVEPDELEDYRVSKVKSSSIRIKEAKLQKRKQIHDNIVVQGYKPEYDINFEKVSEDDSSHRSSSGSTISHTEGCAQYGGIDARDFAGSAQSVLWDTIVPSRKRTCVSNPRPSPIEKLTKDLHCILHEQQSSYLSGSSEEDLLFESETPWMDSVEMGHGSVLIRHPNSGVQEEESEASSFSMDNKRHLANEIHLGSAAIASNTDDRDVSFPSLSLDKLKKPTEPGTQHELMERNKSQNEMLHILQNHNSPLRCIDLKIYYIFSLESMFDNPQFEESLSSFHELLAEGTFDPSFLGANVEDYKTLKRIALTNLTESKWIEHYNLLKDVKHEKATEGKALEDLMSLHQVIKYPSRGHLMDIVKTFQ | 403 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Busi8g00474 | 403 | Gene3D | - | 1 | 76 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
| Busi8g00474 | 403 | SMART | GATA-3 | 1 | 43 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Busi8g00474 | 403 | PANTHER | OSJNBB0038F03.10 PROTEIN | 3 | 332 | IPR044589 | - | |
| Busi8g00474 | 403 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 2 | 34 | - | - | |
| Busi8g00474 | 403 | CDD | ZnF-GATA | 5 | 44 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Busi8g00474 | 403 | Pfam | GATA zinc finger | 2 | 31 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Busi8g00474 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Busi | Busi-Chr11:21004730 | Busi8g00474 | Busi-Chr8:6518633 | dispersed | |
| Busi | Busi-Chr12:14993043 | Busi8g00474 | Busi-Chr8:6518633 | dispersed | |
| Busi | Busi-Chr11:21085359 | Busi8g00474 | Busi-Chr8:6518633 | wgd | |
| Busi | Busi-Chr12:14940880 | Busi8g00474 | Busi-Chr8:6518633 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Busi11g00313 | . | 15 | 216 | C2C2-Gata Transcription Factor family | AT4G17570 | 48.113 | 5.31e-47 | 162.0 | |
| Busi11g00317 | . | 15 | 216 | C2C2-Gata Transcription Factor family | AT4G17570 | 48.113 | 1.63e-44 | 163.0 | |
| Busi11g01600 | . | 38 | 293 | C2C2-Gata Transcription Factor family | AT3G50870 | 44.656 | 1.39e-54 | 175.0 | |
| Busi11g01704 | . | 108 | 176 | C2C2-Gata Transcription Factor family | AT5G66320 | 47.887 | 1.90e-11 | 62.8 | |
| Busi12g00321 | . | 1 | 507 | C2C2-Gata Transcription Factor family | AT4G17570 | 48.771 | 7.17e-135 | 398.0 | |
| Busi12g00322 | . | 1 | 507 | C2C2-Gata Transcription Factor family | AT4G17570 | 52.462 | 3.27e-153 | 446.0 | |
| Busi13g01058 | . | 14 | 331 | C2C2-Gata Transcription Factor family | AT5G25830 | 52.522 | 2.67e-97 | 290.0 | |
| Busi14g01185 | . | 15 | 135 | C2C2-Gata Transcription Factor family | AT5G49300 | 43.651 | 1.93e-20 | 80.9 | |
| Busi1g00920 | . | 217 | 319 | C2C2-Gata Transcription Factor family | AT3G54810 | 68.269 | 1.77e-41 | 146.0 | |
| Busi1g00927 | . | 18 | 286 | C2C2-Gata Transcription Factor family | AT1G08010 | 30.612 | 1.63e-35 | 130.0 | |
| Busi2g00593 | . | 79 | 243 | C2C2-Gata Transcription Factor family | AT2G45050 | 40.187 | 5.70e-39 | 135.0 | |
| Busi2g01773 | . | 10 | 133 | C2C2-Gata Transcription Factor family | AT5G49300 | 36.364 | 8.85e-17 | 72.0 | |
| Busi5g01338 | . | 13 | 139 | C2C2-Gata Transcription Factor family | AT5G49300 | 52.055 | 4.80e-40 | 130.0 | |
| Busi6g00179 | . | 1 | 139 | C2C2-Gata Transcription Factor family | AT5G49300 | 55.705 | 1.63e-44 | 141.0 | |
| Busi6g00963 | . | 45 | 262 | C2C2-Gata Transcription Factor family | AT3G24050 | 46.46 | 2.82e-49 | 162.0 | |
| Busi7g00220 | . | 118 | 352 | C2C2-Gata Transcription Factor family | AT4G26150 | 41.897 | 4.60e-35 | 128.0 | |
| Busi7g00342 | . | 14 | 331 | C2C2-Gata Transcription Factor family | AT5G25830 | 52.41 | 4.08e-94 | 281.0 | |
| Busi7g00377 | . | 14 | 152 | C2C2-Gata Transcription Factor family | AT5G25830 | 48.701 | 6.70e-26 | 100.0 | |
| Busi8g00439 | . | 1 | 251 | C2C2-Gata Transcription Factor family | AT2G45050 | 53.43 | 1.27e-73 | 224.0 | |
| Busi8g00474 | . | 12 | 398 | C2C2-Gata Transcription Factor family | AT4G17570 | 44.254 | 2.20e-88 | 275.0 | |
| Busi9g00369 | . | 93 | 317 | C2C2-Gata Transcription Factor family | AT5G66320 | 52.155 | 8.37e-65 | 207.0 | |
| Busi9g01698 | . | 67 | 206 | C2C2-Gata Transcription Factor family | AT3G60530 | 40.909 | 1.02e-27 | 107.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Busi | GATA | 1.6e-10 | CL0167 | TF | C2C2-GATA |