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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Busi8g00511 ATGGAAGCACCTGACGGAAGCTCTTCTGATAAAAAATGGATTCCCCTCGAATCGAATCCTGATGTTATGAACCAGTTCCTTTGGGGGCTTGGTCTTCCAGATAATGAAGCAGAGTGTTTTGATGTGTATGGTTTGGATGATGAGCTCTTGGAGATGGTTCCAAAGCCTGTACTTGCCGTGTTGTTTCTTTTCCCCATGCCTGAAGAGACTGAAGAAGAGAAAATGTTGGACGGGAGTACTAAAAAGACACCAAGTGATAAAGTTTACTTCTTGAGGCAAACTGTTGGAAATGCTTGTGGGACAATTGGACTGCTTCATGCTCTTGGGAATGTAACTTCAGATATCAAGCTTGTGGAGGGGTCGTACTTGGATAGATTTTTCAAATCTACGGCAAGCATGGACCCATGGGAGCGTGCAGCTTTTCTTGAGAAAGACAGAGAGATGGAAGCCGCACATTCCATAGCAGCTGTTGCTGGTGATACAGAGGCAAGGGAACTGTATGAACTTGACGGAAGAAAGGCACAACCGATATCACATGGTGCATCCTCACCAAGCAGCTTATTGCAGTTTAATTTTTTCATTCTCTGTCACATGGACGCCCTTTAG 606 44.72 MEAPDGSSSDKKWIPLESNPDVMNQFLWGLGLPDNEAECFDVYGLDDELLEMVPKPVLAVLFLFPMPEETEEEKMLDGSTKKTPSDKVYFLRQTVGNACGTIGLLHALGNVTSDIKLVEGSYLDRFFKSTASMDPWERAAFLEKDREMEAAHSIAAVAGDTEARELYELDGRKAQPISHGASSPSSLLQFNFFILCHMDAL 201
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Busi8g00511 201 FunFam - 8 76 - -
Busi8g00511 201 Pfam Ubiquitin carboxyl-terminal hydrolase, family 1 13 186 IPR001578 GO:0004843(InterPro)|GO:0006511(InterPro)
Busi8g00511 201 Gene3D - 7 194 IPR036959 GO:0004843(InterPro)|GO:0006511(InterPro)
Busi8g00511 201 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 93 110 IPR001578 GO:0004843(InterPro)|GO:0006511(InterPro)
Busi8g00511 201 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 53 65 IPR001578 GO:0004843(InterPro)|GO:0006511(InterPro)
Busi8g00511 201 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 15 32 IPR001578 GO:0004843(InterPro)|GO:0006511(InterPro)
Busi8g00511 201 CDD Peptidase-C12-UCH-L1-L3 13 190 - -
Busi8g00511 201 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 9 189 IPR001578 GO:0004843(InterPro)|GO:0004843(PANTHER)|GO:0005737(PANTHER)|GO:0006511(InterPro)|GO:0016579(PANTHER)
Busi8g00511 201 SUPERFAMILY Cysteine proteinases 11 190 IPR038765 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Busi8g00511 K05609 ubiquitin carboxyl-terminal hydrolase L3 [EC:3.4.19.12]