AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cati3g00015 | ATGCAAACCTACACAACATCTGTACAAGATATTCAAAGGTGGAACGGTGCCCCTCCTATACGACGCAAGTTGGTTCAAGTAAACACCCTTCATTCTCCTTCTGAGGCTCATCAAGTACATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACATGGTGGTACTTCTTTATTGGAGGAAGATATAGAACCCATTCCATTTACTGTTTCTAAAGCGGATACCGATGGGGGTGGAATTGACAATACAACAATTATTATTGTTGTTGTTTCTACTTCAGTCGTCACATTTCTTCTTGCTACCATTCTCTTTTGTTGGTATACTAGGACTTTTGGTGGGGGGAAAAATGATGAGAAACCGCTTCTCAGCTTAAGTAGGGGTGCCTCACAAAAATCTTCATACTCTATCAAAGATTCTGGTGATCAACCATTTTCAGACCTACAGAAAAAAGATTCTTCTGTACATGCAACTGTATCATTAGCCTTGGCACCAGAGCCACCTCCAGGAAGTTTGAGTGCTTCTGGAATACCCCCTCTAAAACCTCCACCTGGAAGGGCTGAATCCACATTAAAGCCTCCACCTGGAAGGACTGATTTGTCAGTACACCCTCCATCTGTAAATAGTGTTTCAACTCCTCCTCATCGATCACCTACTGCAGCTCCATCCCCAGCTCCAGCTCCAGCTCCAGCTCCAGCTCCTCCTCTAAGAGCTCCTTCAGCTAGACATCCCCCACCGCCTCCTCCACCATCTGCAGGAGTACCCCCACCGCCTCCTCCCCTCAAGGAAGGTCCACGCCCACCACCTCCTCCTCCAGGTGCTGGTAAAGCTCCACCTCAACCACCTGTTGGAGGCCTTAAAGCTTCCCGTCATACATTTGGACAAGGTGACCCTGATGCCGATGATTCTAACAAGACTAAGTTGAAGCCGTTCTTTTGGGATAAGGTTATGGCAACCCCTGATCAAGCAATGGTTTGGAATCAGATTAGAGCAGGATCATTCCAGTTCAATGAAGAAATGATAGAAAATTTATTTGGCTATAATGCTGTCGATAAAAATAAAGGCAACAACAAGAAAAGTTCAGCTGCACAAGATCCTTCTTCTAATTACGTTCAAATTATTGATTCAAAGAAGGCCCAAAATTTGTCCATTCTTCTAAAAGCACTGAATGTGACAACAAATGAAGTATGTGATGCACTTAAAGAAGGAAATGAGCTTCCTGTAGAACTTATTCAAACTTTGCTGAAGATGGCACCAACTGGAGAGGAAGAACTGAAACTAAGGTTGTATAACGGGGATCTTTCTCGCCTTGGAACTGCAGAGCGGTTTCTAAAAAGATTGGTTGAAATACCCTTTGCTTTTAAAAGGCTCGAGTCATTGCTTTTTATGTGCACACTTCAAGACGAGGAAGAAATCATTAAGGAGTCCTTCCAAACGTTAGAGGCTGCTTGCGTACAACTTAGGAAAAGTCGGTTGTTCCTCAAACTTTTGGAAGCTGTTCTAAAAACAGGGAATCGTATGAATGATGGAACTTTCCGTGGCAGTGCCCAAGCATTCAAACTTGACACACTCTTGAAGCTTTCAGATGTAAAAGGTGTCGATGGGAAAACGACTCTTTTGCATTTTGTGGTACTAGAGATCATTCGTGCAGAAGGCATTAGAGCTGCCAAAACGTTCCAGGAGACCTCCAGCTTTAAAACCGATGATTTTCATGAAGAAGTTGCTGCTAGTTCTTCTCAAGGTGATACAGATGAATATTATGGCACCCTTGGTCTTCAGGTTGTGTCTAGGTTGAGTAGTGAGCTCGAGGATGTCAAGAAAGCGGCCATTCTTGATGTTGAAGGCTTGACTGGTACAGTCTCTAAATTTGGTCAGGCACTCGTAAAAGCTCGTGAGTTCCTAAATACAGATCTCAAGAGCTTAGAAAAAGAAGACGAGGATGAATATGACGATGATGATGATGATGATGATGAGTTCTCGACAACTTTATCCAACTTTGTGCAAACCGCTGAGAAGGATGTGATGTGGATGCTCGAGGAAGAAAAAAGAATAATGGCTCTTGTGAAGAACACCGCAGATTATTTCCATGGCCAGGCCGGAAAGGATGAAGGATTACGATTATTCATCATTGTTCGTGATTTTCTTATAATTTTAGACAAAGTGTGTAAAGAGGTCAAAGCCATGCCTCTAAGGCCCTCGCTTAAGACGTCATCAACAAAAGATGTTTCATTGTCTAAGACAACAGAGACAAAAGATGATGTTTCATCACCTAGGACCACACAGACAAATGATGTCCATACGACAACTAGAACACAAGAAACTGATGAGACACCTAGAACACAAGACGAGGATTCACCACACAAGATATGGGAAACTAAGGATCCACAACAGGAACCTAAGGATTTGCTACATGGAACAGAATCATCATACAAGATACAGAAAACGGATGATGGGCAACATGAAATCGATTATTTACCTCATGAAATGCATGAAAGGATAGAATCACAAGAAGTTGATGATTCACTACATCAATCACAATAA | 2532 | 42.5 | MQTYTTSVQDIQRWNGAPPIRRKLVQVNTLHSPSEAHQVHEEEEEEEEEEHGGTSLLEEDIEPIPFTVSKADTDGGGIDNTTIIIVVVSTSVVTFLLATILFCWYTRTFGGGKNDEKPLLSLSRGASQKSSYSIKDSGDQPFSDLQKKDSSVHATVSLALAPEPPPGSLSASGIPPLKPPPGRAESTLKPPPGRTDLSVHPPSVNSVSTPPHRSPTAAPSPAPAPAPAPAPPLRAPSARHPPPPPPPSAGVPPPPPPLKEGPRPPPPPPGAGKAPPQPPVGGLKASRHTFGQGDPDADDSNKTKLKPFFWDKVMATPDQAMVWNQIRAGSFQFNEEMIENLFGYNAVDKNKGNNKKSSAAQDPSSNYVQIIDSKKAQNLSILLKALNVTTNEVCDALKEGNELPVELIQTLLKMAPTGEEELKLRLYNGDLSRLGTAERFLKRLVEIPFAFKRLESLLFMCTLQDEEEIIKESFQTLEAACVQLRKSRLFLKLLEAVLKTGNRMNDGTFRGSAQAFKLDTLLKLSDVKGVDGKTTLLHFVVLEIIRAEGIRAAKTFQETSSFKTDDFHEEVAASSSQGDTDEYYGTLGLQVVSRLSSELEDVKKAAILDVEGLTGTVSKFGQALVKAREFLNTDLKSLEKEDEDEYDDDDDDDDEFSTTLSNFVQTAEKDVMWMLEEEKRIMALVKNTADYFHGQAGKDEGLRLFIIVRDFLIILDKVCKEVKAMPLRPSLKTSSTKDVSLSKTTETKDDVSSPRTTQTNDVHTTTRTQETDETPRTQDEDSPHKIWETKDPQQEPKDLLHGTESSYKIQKTDDGQHEIDYLPHEMHERIESQEVDDSLHQSQ | 843 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cati3g00015 | 843 | MobiDBLite | consensus disorder prediction | 214 | 276 | - | - | |
| Cati3g00015 | 843 | MobiDBLite | consensus disorder prediction | 766 | 836 | - | - | |
| Cati3g00015 | 843 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 242 | 725 | - | - | |
| Cati3g00015 | 843 | MobiDBLite | consensus disorder prediction | 32 | 61 | - | - | |
| Cati3g00015 | 843 | MobiDBLite | consensus disorder prediction | 199 | 213 | - | - | |
| Cati3g00015 | 843 | MobiDBLite | consensus disorder prediction | 125 | 303 | - | - | |
| Cati3g00015 | 843 | MobiDBLite | consensus disorder prediction | 731 | 843 | - | - | |
| Cati3g00015 | 843 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 295 | 741 | IPR015425 | - | |
| Cati3g00015 | 843 | MobiDBLite | consensus disorder prediction | 40 | 55 | - | - | |
| Cati3g00015 | 843 | PRINTS | Proline rich extensin signature | 208 | 224 | - | - | |
| Cati3g00015 | 843 | PRINTS | Proline rich extensin signature | 228 | 245 | - | - | |
| Cati3g00015 | 843 | PRINTS | Proline rich extensin signature | 248 | 273 | - | - | |
| Cati3g00015 | 843 | PRINTS | Proline rich extensin signature | 164 | 176 | - | - | |
| Cati3g00015 | 843 | PRINTS | Proline rich extensin signature | 181 | 202 | - | - | |
| Cati3g00015 | 843 | MobiDBLite | consensus disorder prediction | 751 | 765 | - | - | |
| Cati3g00015 | 843 | MobiDBLite | consensus disorder prediction | 125 | 153 | - | - | |
| Cati3g00015 | 843 | Pfam | Formin Homology 2 Domain | 300 | 714 | IPR015425 | - | |
| Cati3g00015 | 843 | Gene3D | Formin, FH2 domain | 301 | 750 | IPR042201 | - | |
| Cati3g00015 | 843 | PANTHER | FORMIN-RELATED | 58 | 757 | IPR027643 | GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro) | |
| Cati3g00015 | 843 | SMART | it6-source | 295 | 730 | IPR015425 | - | |
| Cati3g00015 | 843 | MobiDBLite | consensus disorder prediction | 168 | 187 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cati3g00015 | K28090 | formin |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 35449 | Cati3g00015 | Cati7g03371 | |
| 35450 | Cati3g00015 | Cati9g01979 |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 895771 | Cati | Cati3g00015 | Cati-Chr3:147466 | Cati9g01980 | Cati-Chr9:21111420 | |
| 939873 | Cati | Cati3g00015 | Cati-Chr3:147466 | Cati7g03371 | Cati-Chr7:70921888 | |
| 940024 | Cati | Cati3g00015 | Cati-Chr3:147466 | Cati9g01979 | Cati-Chr9:21111420 |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cati10g00908 | ACH | 552 | 1025 | FH2 protein (formin) gene family | AT3G25500 | 63.38 | 0.0 | 593.0 | |
| Cati10g00909 | ACH | 694 | 1025 | FH2 protein (formin) gene family | AT3G25500 | 71.72 | 1.52e-166 | 491.0 | |
| Cati10g00910 | . | 552 | 693 | FH2 protein (formin) gene family | AT3G25500 | 59.091 | 3.34e-41 | 159.0 | |
| Cati12g00823 | . | 152 | 884 | FH2 protein (formin) gene family | AT3G05470 | 50.135 | 0.0 | 618.0 | |
| Cati12g01808 | ACH | 693 | 1102 | FH2 protein (formin) gene family | AT2G25050 | 66.098 | 4.69e-172 | 533.0 | |
| Cati1g00440 | ACH | 454 | 884 | FH2 protein (formin) gene family | AT5G67470 | 71.991 | 0.0 | 607.0 | |
| Cati2g00629 | . | 1 | 431 | FH2 protein (formin) gene family | AT1G31810 | 70.998 | 0.0 | 696.0 | |
| Cati2g00628 | . | 1 | 431 | FH2 protein (formin) gene family | AT1G31810 | 70.998 | 0.0 | 696.0 | |
| Cati2g01471 | ACH | 440 | 866 | FH2 protein (formin) gene family | AT5G54650 | 58.782 | 2.82e-156 | 481.0 | |
| Cati2g01674 | . | 10 | 759 | FH2 protein (formin) gene family | AT1G70140 | 43.196 | 0.0 | 542.0 | |
| Cati3g00015 | ACH | 420 | 867 | FH2 protein (formin) gene family | AT5G54650 | 64.502 | 0.0 | 575.0 | |
| Cati4g00317 | ACH | 391 | 900 | FH2 protein (formin) gene family | AT5G54650 | 53.604 | 1.66e-162 | 494.0 | |
| Cati5g02235 | ACH | 437 | 885 | FH2 protein (formin) gene family | AT5G54650 | 59.442 | 2.07e-169 | 516.0 | |
| Cati6g01160 | . | 568 | 1025 | FH2 protein (formin) gene family | AT3G25500 | 53.422 | 3.05e-169 | 514.0 | |
| Cati6g04375 | ACH | 1218 | 1637 | FH2 protein (formin) gene family | AT5G07740 | 70.188 | 0.0 | 586.0 | |
| Cati7g03371 | ACH | 391 | 900 | FH2 protein (formin) gene family | AT5G54650 | 58.152 | 0.0 | 571.0 | |
| Cati8g02224 | ACH | 427 | 880 | FH2 protein (formin) gene family | AT5G67470 | 71.861 | 0.0 | 643.0 | |
| Cati9g00817 | . | 283 | 730 | FH2 protein (formin) gene family | AT1G70140 | 51.392 | 3.99e-142 | 455.0 | |
| Cati9g00909 | . | 1 | 593 | FH2 protein (formin) gene family | AT5G07740 | 58.07 | 0.0 | 693.0 | |
| Cati9g00913 | . | 114 | 328 | FH2 protein (formin) gene family | AT5G07740 | 65.438 | 6.05e-94 | 300.0 | |
| Cati9g01979 | ACH | 436 | 882 | FH2 protein (formin) gene family | AT5G54650 | 60.793 | 9.83e-168 | 509.0 | |
| Cati9g01980 | ACH | 436 | 882 | FH2 protein (formin) gene family | AT5G54650 | 60.793 | 7.57e-171 | 512.0 | |
| Cati9g02319 | . | 1 | 603 | FH2 protein (formin) gene family | AT5G07740 | 55.056 | 0.0 | 634.0 | |
| Cati9g02320 | . | 1 | 603 | FH2 protein (formin) gene family | AT5G07740 | 55.056 | 0.0 | 634.0 | |
| Cati9g02321 | . | 1 | 374 | FH2 protein (formin) gene family | AT1G31810 | 49.223 | 2.71e-124 | 408.0 | |
| Cati9g02322 | . | 1340 | 1644 | FH2 protein (formin) gene family | AT5G07740 | 66.885 | 6.56e-126 | 392.0 | |
| Cati9g02325 | . | 1218 | 1638 | FH2 protein (formin) gene family | AT5G07740 | 67.612 | 3.99e-178 | 548.0 | |
| Cati9g02324 | . | 1218 | 1638 | FH2 protein (formin) gene family | AT5G07740 | 67.612 | 3.26e-178 | 550.0 | |
| Cati9g02327 | ACH | 1339 | 1597 | FH2 protein (formin) gene family | AT5G07740 | 58.427 | 7.19e-89 | 288.0 | |
| Cati9g02328 | ACH | 1339 | 1597 | FH2 protein (formin) gene family | AT5G07740 | 50.714 | 2.58e-73 | 244.0 | |
| Cati9g03588 | ACH | 614 | 1026 | FH2 protein (formin) gene family | AT3G25500 | 63.274 | 0.0 | 534.0 |