AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00023 ATGCAAGAACAAAGTGGAAGTAGGAGTTGTCAACGAGGGCGGGAACAAGCTCAGGCAAAGGGAGCTGGAGGCGAGCATCGGCATTGGTGGCGTGCTCGTGGGCTAGCCGCAGGGCAAGGCAATGGAGCTGTTTGGGTATGCCAGTCGATGCAACGTGCCGGTACAGGAGTAATAATTAACATGGAATCCATACTGGCAAGGGCGCTGGAGTATACTCTCAAGTACTGGCTTAAATCTTTTACCAGAGATCAGTTCAAGCTACAAGGACGCACTGTTCAGCTCTCCAATTTAGATATAAACGGTGATGCCTTGCACGCAAGTCTTGGATTGCCCCCGGCATTGAATGTTACCACCGCCAAAGTCGGCAAGTTAGAGATTATTCTCCCTTATTTGAGCAATGTACAAGTTGACCCCATTGTTGTGCAAATCGATAAGCTTGATTTAGTATTAGAGGAAAATGACGATTTGGATGCATATAAGACCCCAGACAGTGCACACACGCCATCCACTCCTGCAAAAACCACTGGATATGGATTTGCCGACAAGATTGCAGACGGAATGACATTACAAGTACGGACTGTCAATCTTTTACTTGAGACTCATGGGGGTGCTAGACGACGCGGAGGAGCAACTTGGGCATCGCCAATGGCATCTATTACTATCCGCAACCTCTTGCTCTATACCACAAATGAGAATTGGCAGGTTGTAAACCTTAAGGAAGCCAGGGACTTTTCAAATGACAAGAAGTTCATCTATGTGTTCAAAAAGCTTGAATGGGAGCATCTATCCATCGACCTCCTGCCTCACCCTGATATGTTTTCAGCATTTTCTGAAGGTGCATTTAAGGATGACGATGGTGCAAAGCGTGTATTCTTTGGTGGGGAGCGGTTCCTTGAAGGAATATCTGGAGAAGCTTATATTACCATACAAAGGACAGAGCTTAATAGTCCACTAGGGTTGGAACTCCAGTTACATATAACCGAAGCCGTATGCCCAGCTCTGAGTGAACCAGGGCTTCGAGCTCTTCTTCGCTTCTTTACGGGATTGTATGTCTGTCTGAATAGAGGAGATGTAAATCCAAATGCTCAAGAGCGATCAGCGGAAGCTGCAGGGCGTACACTAGTCTCCATTATGGTGGACCATATATTTTTTTGCATCAAGGATACTGACTTCCAGTTAGAACTTCTGATGCAGTCACTTCTCTTTTCTCGGGCCAGCCTTTCTGATGGGGAAATTGCCAAATGCTTAACTCAAGTGATGATTGGTGGACTATTTCTGCGGGATACTTCCTCTCGCCCGCCATGTGCATTAGTGCAACCAAGTATGCAGGATGCTGCAGAGGAACAATTACACATTCCCGATTTCGCAACGAATTTTTGTCCTCCAATATATCCGTTAGGGGATCAGCAACGGAAATTAAGTGACCATGCTCCACTCATGTCCCTCCATTGTCTTCAGTTTATGCCCTCTCCTACTCCACCATCCTTTTGTTCACAAACCGTCATCAACTGCCAGCCTCTTATGATACATCTTCAAGAAGAGTCCTGTCTAAGAATATCATCCTTACTAGCTGATGGAATTGTGATTAATCCTGGTGATATTTCGCTAGATTTCTCTGTGAACTCCCTTGAAGTCAATGTGAAAGGACTAGATATCACTATTCCACTGGACAACCAAAAGCTTAAGTCTCCTTCCTGCAACAACTACCCTGTATATGAGAGCTCCTTTACTGGAGCAAGGCTTCATATTGATAACTTATTCTTTTACGAGTCACCTTCCCTGAGGCTGAAGATGCTCAATCTTGAGAAGGACCCAGCATGCTTCTGTCTATGGAAGGGGCAACCCATTGATGCCAGCCAGAAAAAATGGACAACTGGAGCTTCTCTCCTTAGTCTGTCTCTGGAAACATGTAATAAATCGAAAGGAGCTGGTGGTTCTCTTTTGCACTCAGAATTGTGGAGTTGTGTTGAGATTAAAGGTGCTTGCATCCAGGTAGCAATGGTAACAGCAGATGGAAGCCCTTTAATAGATGTCCCTCCCCCAGGGGGTGTTGTTAGAGTAGGAGTTGCTTGTGAACAATATTTGTCCAACACCTCGGTTGAGCAACTATTCTTTGTGTTGGATCTCTATGCCTACTTTGGTATGGTCAGCGAGAAGATGGCCATGGTTGGAAGAAGTAAACATAAGAAAGCGGTGAAGCATGAACCTTGTGATGGAAGTCTGATCGAAAAAGTTCCTGGTGATACTGCTGTTATCTTAGCAGTTAAGGACCTAAAGCTAACATTTCTAGAATCTTCCTCCGTGGACATTCAGGGAATGCCTCTAGTTCAGTTTGCTGGGCAAGATCTGTTCATGGAAGTTACTCATAGAACCTTGGGTGGTGCCATGGCCATTTCATCAACTTTACGGTGGGACAAAGTTCAGGTGGAGTGTGCAGAGACTGAGAGAAGCTCTATAAATGCAAATGGTGTAATGCCAAATGCTACCTCAGATTTTCTTCCTGTTCCAAATGGCAACCCTAAATTGAGAACTGTCTTTTGGGTGCAAAACAAAAGGATTCATCAAGCAAATGACAGTGCTGCCTCAATTCCATTTTTGAATTTACGCATGGTGCATGTTATTCCGTATAATTCACAGGATACAGAGTGTCATAGCTTAAGTGTGACAGCTTGTATTGCGGGTGTACGCCTTGCAGGAGGAATGAATTATGTTGAAGCTCTACTCCACCGCTTTGGAATTCTAGGACGAGATGGTGGTCCTGGGGTTGGGCTCTCCAAGGGTTTGGAGCATTTATCTGCTGGGCCATTGTCAAAACTTTTCAAAGCATCACCTCTACTTGTTCAGGATTTCAGAGAGAATTCTAAAAGTGAAAGCATGGAGGAGAAGCATAGTGGTTACTTGCACTTGGGTGCACCGGATGATGTAGATATATCACTAGAATTGAAGGACTGGTTATTTGCATTGGAGGGTGCAGAGATGGCAGAAAGATGGTGGTTCTACAGTTCAGATGATTCTTACAGAGAAGAGAGGTGTTGGCACACAACTTTTGAGAGTTTTAAAGTTAAAGCAAACAGCAGCAAAAATAACTCCGCGAATGGCAAAAAGAGTTTTCCTGGAGCACAGAAGTATCCTTTTGAATCAGTGACGGTCGGTGTTGAAGGCTTGAAGACGTTAAAACCCCAGCAGCAGAAGGGAATTGTAGCCACAAACGGGCACAAGCAAACTGTCGAGTCACATGGTGGGGTAGATCTTGAAGCTGACATAGTGTTATCTGAAGATGATGGTGCCAATAATTGGGTGGTGGAAAGTTTAAAATTTTCTGTGAAACATCCGGTTGAGGCAATTGTAAGCAAGGATGAGCTGCAACATGTTGCTCAACTATGCAAGTCAGAAGTTGATTCCATGGGGAGAATAACTGCTGGGGTTTTGCGTGTGTTGAAGCTAGAAGGATCAGTTGGTCAGACAGCAATGGATCAACTAAGCAACCTTGGAAGTGAAGGCTTCGACAAGATCTTTTCACCAAATAACCTGCGAAGAGATATTAATGCTTCTAGTCCGTCTTCCCTAGGGACTTCAGATAGCCAACGTTCTTCTTTGTCCTTTAATTCAACATTAACTAAACTGGAGGCTGCGTTGTTAGATTCACAGACAAATTGTGCAGCTCTTGCTGATGAATTAAGCAGTTCTGAATCTTCCAAGCCACATCTTCAAAGTGTGGAACAACTGGCTCAGAAACTAGCGAGTATGCAGAAACTGTTGTCAACGTTGCAGACTCAAAAAGCACAAGAGACGGTCTTAGTGCTTGTGTTCTAA 3813 44.51 MQEQSGSRSCQRGREQAQAKGAGGEHRHWWRARGLAAGQGNGAVWVCQSMQRAGTGVIINMESILARALEYTLKYWLKSFTRDQFKLQGRTVQLSNLDINGDALHASLGLPPALNVTTAKVGKLEIILPYLSNVQVDPIVVQIDKLDLVLEENDDLDAYKTPDSAHTPSTPAKTTGYGFADKIADGMTLQVRTVNLLLETHGGARRRGGATWASPMASITIRNLLLYTTNENWQVVNLKEARDFSNDKKFIYVFKKLEWEHLSIDLLPHPDMFSAFSEGAFKDDDGAKRVFFGGERFLEGISGEAYITIQRTELNSPLGLELQLHITEAVCPALSEPGLRALLRFFTGLYVCLNRGDVNPNAQERSAEAAGRTLVSIMVDHIFFCIKDTDFQLELLMQSLLFSRASLSDGEIAKCLTQVMIGGLFLRDTSSRPPCALVQPSMQDAAEEQLHIPDFATNFCPPIYPLGDQQRKLSDHAPLMSLHCLQFMPSPTPPSFCSQTVINCQPLMIHLQEESCLRISSLLADGIVINPGDISLDFSVNSLEVNVKGLDITIPLDNQKLKSPSCNNYPVYESSFTGARLHIDNLFFYESPSLRLKMLNLEKDPACFCLWKGQPIDASQKKWTTGASLLSLSLETCNKSKGAGGSLLHSELWSCVEIKGACIQVAMVTADGSPLIDVPPPGGVVRVGVACEQYLSNTSVEQLFFVLDLYAYFGMVSEKMAMVGRSKHKKAVKHEPCDGSLIEKVPGDTAVILAVKDLKLTFLESSSVDIQGMPLVQFAGQDLFMEVTHRTLGGAMAISSTLRWDKVQVECAETERSSINANGVMPNATSDFLPVPNGNPKLRTVFWVQNKRIHQANDSAASIPFLNLRMVHVIPYNSQDTECHSLSVTACIAGVRLAGGMNYVEALLHRFGILGRDGGPGVGLSKGLEHLSAGPLSKLFKASPLLVQDFRENSKSESMEEKHSGYLHLGAPDDVDISLELKDWLFALEGAEMAERWWFYSSDDSYREERCWHTTFESFKVKANSSKNNSANGKKSFPGAQKYPFESVTVGVEGLKTLKPQQQKGIVATNGHKQTVESHGGVDLEADIVLSEDDGANNWVVESLKFSVKHPVEAIVSKDELQHVAQLCKSEVDSMGRITAGVLRVLKLEGSVGQTAMDQLSNLGSEGFDKIFSPNNLRRDINASSPSSLGTSDSQRSSLSFNSTLTKLEAALLDSQTNCAALADELSSSESSKPHLQSVEQLAQKLASMQKLLSTLQTQKAQETVLVLVF 1270
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00023 1270 Coils Coil 1239 1259 - -
Cati3g00023 1270 PANTHER UNCHARACTERIZED 61 1257 IPR026728 -
Cati3g00023 1270 Pfam VPS13-like, N-terminal 61 159 IPR026854 -
Cati3g00023 1270 MobiDBLite consensus disorder prediction 1 26 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00023 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
35452 Cati3g00023 Cati9g01986
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
895779 Cati Cati3g00023 Cati-Chr3:169597 Cati9g01986 Cati-Chr9:21193939
914989 Cati Cati3g00023 Cati-Chr3:169597 Cati3g00025 Cati-Chr3:172134
920849 Cati Cati3g00022 Cati-Chr3:169597 Cati3g00023 Cati-Chr3:169597
920850 Cati Cati3g00023 Cati-Chr3:169597 Cati3g00024 Cati-Chr3:169597