AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00026 ATTTCTCAGCTCCACATGGCCCCTTATGTTCTCTTTTGTAGAATCATGTCCATGTGAAGTATCTGGATCAATCTCACTTTTCTTGTCGAGAATTGCAAAGACTGAAGTAACAGCATTACTTCCTCTTGAGATGTCTTTAGTCATGCTTCCTGCATCAGCTATTGTATATGCTGTGAACAATAACACCAAAAATGCTTGAAAAAGCTTCTCTGGAGCTATTAATCCTTGTGTTAGTAGCCGACCTCCATACCAATATGCCAAGGCAGTTGAAGTTGTTGCCATAAACTTGGAGCTAAAAAGTCCGACCCCAGAATAATACGATTGCTTGATACTCTCCTTCTTAGGGCCTTCTAGTGTGTCCTTGAAGAGACTAACCACCCTTCTTTGAGAAGAGAAGGCGGTTATTGTTCTATGGTTGATGACGGCTTCACTTGCTAGTTGGCTTCCTTCCTTTTGAGCCTTCTGAGACTTTTCTGACAAACTCTTCATTAAGACACTTCTAGCATAGAAACTTCCAATGACGAATGGTTGTGCAGCCATCAACACAAGTGCCAACCTCCATGAGAGTACCAAACCTAATGTATAAGCAAAGACAACCCCAAAAAATGCTTGAGTTAGTAATGACAAACGGTCTCCTATAAGCGAACGAAGCATGCTAGCTTCAGATGATAAACGTGCACAAATGGCTGCACTTGTGTTCTCTTCTTGATCATACCAACCGATCTCAAAAGTTAAGAGCTTCTCGAGCAGCTTCTTTCGTACTCTCGTGATCAGCTTCTCTCCCATCACAGCAAAACTGTAATGTTGGATGACACTGGATATAAAGCTAAAAACTCCAAGACCTACGAATACAAACGAGTAGGTTCTTGCATGATCCACAATGGAGGATTTTTCAGACTGGAAATAAACATGGATAACACCACCAACACAGTATGCGTTGATGGGTTGAATAGCACCGGAGCCTATGGCTCCTAAGCATCCCCATAAGGCTGTTCCCCACTCTGGTGCATTCATTTTCAACAAACGAAATTGAGAAGGAGCTGAATGCGATAGTTTTCTCAATTTATCTTCTTCATCACTATCATAAGAGGCGTTGAATTGAATGGAATAGGGTGTAGTAACGGAGAATGCTGGACTGAATGGATTCAGTAATGGGGTGCTAGGTGCACTTGATTTAACACTTGTTGGACTGGCTGCAATTGGAATTTTATGGGGACTTTGGGAACTACTTGATAAGTCCATGACTTCATTTCCTGGAGTTGATTGTTGCAACTGCACCATTTTAAAGTACTCACCACCACAATCATCTTTTTTACCATTCATCTGCATCAATTCAACATGTGAACCTGATTCGACTACTTTCCCTGCCTGAAGCACGTATATCATATCGACCCTCCTAATTGTTGATAAACGGTGAGCAATTACAATAGTTGTTCTCCCAACAGAGGCCTGGTCAATGGCTTTTTGCACAACTCGTTCAGACTCTACGTCAAGTGCACTTGTTGCTTCATCAAGGAGCAAGATTTTTGGATCTCTTATTAGTGCCCGAGCAATTGCAACTCGCTGCTTTTGGCCTCCAGATAGTTGAATTCCAAATTGGCCAACCTGTAAGTAATACAACACCTTATTATCAATTCAACTTCCATAGTATCATGAAGGAGATAGAGGTTTGAGTTTTGAGGTCAAACATCCAAATCTTACATCGGTTTCATACCCATCTGGCAACTTAACAATAAAGTCATGTGCATTTGCATCCTTGGCTGCTGCTACAACATCATCAAAAGGTGCCCCTTCCTTCCCAAACAATATGTTCTCTTTGATAGAAGTTGCAAACAGGAGTGGCTCTTGATTCACTACACCCATTTGGGATCTTAACCATCTAAGATGAAGTTTATTTATCTTGTGTCCATCTAACAAAATCTCACCCTTTATTGGATCATAAAACCTTAGAATAAGTGACATAATTGTTGACTTGCCGGAACCGCTACCTCCAACAAGACCTGCAGTCTTACCAGCTGGTATCATGAGATTCAACCCTTGTAGAATAGGGGAATTAGGCCTCGACGGGTAGCTAAAGTAGATTTCTTTGAACTCAATTTTACCCCTCACATGTGATAGGGCCTTTCCTTTCTTATCTTCTGAGTCGATAGTTGGATTTTTATCGATCATCTCACTTATTCGATTAGCAGCACCTCTTGACTCTACAATGGCAGTAAGATTCGGGAGTGCAGACAATATGTTCCTATAAAATTGAAAAAAATCCCGAGTTTTAAATTATGTATGTATATATATAGAGAGAGAGAGGGGGGGGGGAGAAAGAGAGAAATAGAGAGAGAGAGAGAGAGAGGTGTTATGTTAGAAAAGCTCACAATCCTCCCATGAGCACATTAAATCCAGCAACGAAAACATCACCACCCTTTTCACCATGTTTAGTAACGAGAAGAGATCCGACCCAAGCCTGGAACCCCCAGTTAACATAGATAATCCCCATGCTTCCCAACATGAGTCCTTTAGCAAATCCTTGCTTTATACCTAGTTCCATGGTGGTTTGAAGTGCATTGCCGAAGTTAATGATGGTTTGATGCTCGCCAACATAAGAATAGACAGTCCTTACGGAGGAAATAGCTTGTTCTGCAATAGTACCCGCAGTAGCATAGGATGCAATCATAACCATTCCTACCTCCATCATGAGCTTACCGAATCTGAGAGCAGGTACAAGGAACATTATTGAGAATGGGAGGGCAGCCAAGGTAAGCCTCCAAGATAGCGTAAAGGCGAATATGTGGCAAAAGAAGAAGGATGACAAGTAGGCGATAGTATCTGGTATCTTTTCGCCGATGGTAACTTGAATGGTATTGGAATCAACAGAGATGGTTGAAACAACTTGGTATGTGGTAGAGGAAGTAGCAGCTTGTTGGGTGTCGAAGAAGGAGACATCTTGTTTAAGGACAGATTTGAGGTAGTTAAGTCTCATTCGGGAAGTTTGTCTTTCTGCAGTCCTTGCCCAACAAAGTCCTTCTGCAAACACAAGAGAAGAAGTTAAGGAAGGGGTAATTTACCAAAGTAATGATTGTAAGACACGTACGTACCAACAAAGGCAGATATGCCAACTGAAATTGCAACATAGAGCAGCCTGAGGGAATACTGAAATGGATATATATTTTAGTTATTATATTAACAGTGATGGGATTAGGTTAGGTAAGTGAAATAGCAAATGGAATGTTAGTTACCTTATCGACAATTGAGGAGGTGACAATAGCTTTTGGATCTCCGTATTGGTTGATGACACCGCTAAGTACGTACATCATCAAGGGGACTTGCAGTCCATCTCCAATACTTCCCAACGTTCCCCAAAACATGAAAAACATATCCAATCCATCGGCATACCTAAATATTCCATCTCTTTGTAGCTTATTTATTTCCATTTCTGATTAGTTGATTATTCTACCACTTGAACTTATATATATATAGATACACAAAGTGCATGCAAGAAGGGCATCTCTTCTTCGGCTCCTAAAAGAGAACAATTCCGCCGGCCTAGGCTTATTGTTTTTGTTTATGACAAACTTGTTTAATTATTAATAAGTTGAGAGGTGTGTGTGTTTTGTTTGATCTTGATATCACAAAGTTTGGTTAATTTTCTACAACAACTAGCTGTCATATGTGTGTTTTTTTTGTATCTTTGACGTTACCCACAATTAACTAAGAAGAAGATGTCTATGTTTTGTTGACATAGACACATAGCAAAAAGAAATAGCAAAAAGAAATAGGTTATTTGTTGTTTGGGAATGTAAATGAAAGAAATAGCAAAAAGAGAGGGGGTGTTATGTAACAAATTGAAATTAGAAGAAGAAAGTAGGTTGTTGATGTTGGTCTGGTCTACTGCTCTCCGTCGTCGGCGGTGGTTGGTTGGTTAGTAGTAGTGAAAGTGAAATAGGAGAAAGAAAGAAAGAAAGAAAGAAAGAAATGACGAAGACGACGTTAGGGTGTGAAGCAGCGGTGGGTTCATTAGCCCCATCGAAGAAGAGGGATTACAGAGTCACCAACCGCCTCCAGGAAGGCAAGCGTCCTATTTATGCCGTCGTTTTCAATTTCATCGACTCTCGTTATTACAACGTCTTTGCAACAGTTGGCGGTAATCGAGTTACTGTATACCAATGCCTTGAAGGTGGCGTTATTGCTGTACTCCAGTCATACATTGATGAAGATAAGGATGAGTCTTTCTACACTGTGAGCTGGGCATGTGATGCTGATGGAACACCATTGCTAGTAGCTGGAGGAATTAATGGTATAATCCGTGTCATTGATGCTGGCAATGAGAGGATACACAAGAGTTTCGTTGGTCATGGGGATTCCGTAAACGAAATTAGAACACAAGCACTAAGACCGTCTCTTGTGCTTTCTGCAAGTAAAGATGAATCTGTTCGCCTGTGGAATGTTCAAACTGGAATATGCATTTTGATATTTGCTGGAGCTGGTGGTCATCGAAATGAAGTGTTAAGTGTGGATTTTCATCCATCAGACATATATCGTATTGCCAGTTGTGGTATGGATAACACTGTAAAGATCTGGTCGATGAAAGAGTTTTGGACGTATGTTGAGAGGTCTTTTACATGGGAGGAACTTCCTTCACAATTTCCTACAAAATATGTGCAATTTCCGAGTGTTGATAACGAGTTCATATTGTGGGAGCCAAAGATGAAAGAGCAGTCTCCAGGAGAGGGCACAGTAGATATCCTTCAGAAATATCCGGTTCCGGAGTGTGACATTTGGTTTATAAAGCTTTCCTGTGATTTCCATTACAATACAGCAGCTATAGGCAACAGGGAAGGGAAAATATTTGTATGGGAATTGCAGACCAGCCCCCCATCTCTCATTGCAAGGTTATCTCATGTTCAGTCCAAGTCTCCCATCAGGCAAACTGCCATGTCGTTTGATGGAAGCACGATACTGAGTTGCTGTGAAGATGGAACCATCTGGCGTTGGGATACAGTGGCAACCGCGTAAGCTTGATGGACCATGTTGTACCTTGCTTCTAGTGGTTGATGAAGTAAATGACTCTTTTTATCTTTTAGAGTGTGCAAATGCAAACCATGCTGCCTATGTGCATGGTGTTTGGATAGGAACTATTATATATAAGGAGTACTTGGGACTATCGATCATGTTTGCTTGGGGAAGATTGGTGGTTTATGTATGAGGATGGTCCAGAACATCTAATACAACATGTCATATAGGCGGCTGCATTCACCAACAGTTTTAAATTTACACAATCTATATACCAGAATTCGGCCGATT 5295 40.93 MTKTTLGCEAAVGSLAPSKKRDYRVTNRLQEGKRPIYAVVFNFIDSRYYNVFATVGGNRVTVYQCLEGGVIAVLQSYIDEDKDESFYTVSWACDADGTPLLVAGGINGIIRVIDAGNERIHKSFVGHGDSVNEIRTQALRPSLVLSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVERSFTWEELPSQFPTKYVQFPSVDNEFILWEPKMKEQSPGEGTVDILQKYPVPECDIWFIKLSCDFHYNTAAIGNREGKIFVWELQTSPPSLIARLSHVQSKSPIRQTAMSFDGSTILSCCEDGTIWRWDTVATA 346
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00026 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 205 IPR001680 GO:0005515(InterPro)
Cati3g00026 346 PANTHER POLYCOMB PROTEIN 8 234 IPR051243 GO:0000122(PANTHER)|GO:0006342(PANTHER)|GO:0031491(PANTHER)|GO:0035098(PANTHER)
Cati3g00026 346 PRINTS G protein beta WD-40 repeat signature 328 342 IPR020472 -
Cati3g00026 346 PRINTS G protein beta WD-40 repeat signature 144 158 IPR020472 -
Cati3g00026 346 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Cati3g00026 346 ProSitePatterns Trp-Asp (WD) repeats signature. 144 158 IPR019775 -
Cati3g00026 346 Pfam WD domain, G-beta repeat 172 203 IPR001680 GO:0005515(InterPro)
Cati3g00026 346 Pfam WD domain, G-beta repeat 309 341 IPR001680 GO:0005515(InterPro)
Cati3g00026 346 Pfam WD domain, G-beta repeat 122 157 IPR001680 GO:0005515(InterPro)
Cati3g00026 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 170 205 - -
Cati3g00026 346 Gene3D - 18 344 IPR015943 GO:0005515(InterPro)
Cati3g00026 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 124 161 - -
Cati3g00026 346 SUPERFAMILY WD40 repeat-like 26 341 IPR036322 GO:0005515(InterPro)
Cati3g00026 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 124 166 IPR001680 GO:0005515(InterPro)
Cati3g00026 346 SMART WD40-4 67 114 IPR001680 GO:0005515(InterPro)
Cati3g00026 346 SMART WD40-4 160 203 IPR001680 GO:0005515(InterPro)
Cati3g00026 346 SMART WD40-4 117 157 IPR001680 GO:0005515(InterPro)
Cati3g00026 346 SMART WD40-4 254 295 IPR001680 GO:0005515(InterPro)
Cati3g00026 346 SMART WD40-4 22 64 IPR001680 GO:0005515(InterPro)
Cati3g00026 346 SMART WD40-4 300 341 IPR001680 GO:0005515(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00026 K11462 polycomb protein EED