AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00077 TCGATCATCCATAAACCCTCTCTCTCACTCCCTAACGCCGCCGAATCACATCCGCCGGGTCAACCCAACCACCACCACCACCACCGCCGTAGCTTCAATTGATCGAAATTTGTATTTTCAGATGGATGAGGGTTCACATCGCTCGTAATTTAAACTCAGCCTTCGATTACCGCCGGTTCGTTGCTTCTTCTATTTCATCCATTTCCTCACTCCGGCCACCGGCGGCGGCGGATTGTTCTCTAGCTAATATTCGTACGAAGAGTTGCCTTTCCGCCTTAGGCCGGTTCAATTTATCGACTGTTGCTGCAGTGCGAGATTCTAAGACCATGGGTTCGCTAGCGGGGGAGGTGGAGTGGCCGGCCAACAAAGTTAGGGATTCGTTTATTAAGTTTTTTGAAGAGAAGAATCACGTTTATTGGAAATCAAGTCCGGTTGTCCCTGTCAATGATCCCACTCTTCTCTTTGCAAATGCTGGAATGAATCAGTTCAAGCCTATCTTTTTGGGCACTGCTGATCCTAACACTTCCTTGAGCAAGCTGACCCGTGCCTGCAACACTCAGAAGTGCATTCGAGCTGGTGGGAAGCATAATGATCTCGATGATGTTGGCAAAGACACCTATCACCACACCTTCTTTGAGATGCTTGGTAACTGGTCTTTTGGGGATTATTTTAAACATGAAGCCATTGGATGGGCATGGGAGCTTCTTACAACTGTTTTTAAGCTACCTACTGATCGAATATATGCTACTTATTTTGGCGGTGATGAGAAATTGGGTCTTCCTGCTGATAATGAAGCTAAAGAGATATGGCTCAAATATCTGCCAGCCAAACGAGTATTGCCTTTTGGTTGTAAAGACAACTTCTGGGAGATGGGTGATACTGGACCTTGTGGACCCTGTACTGAAATACACTTTGATAGAATTGGTGGTCGTGATGCTGCAGAGTTGGTCAACAACGATGATCCTACATTGATCGAGATATGGAATGTTGTTTTTATTCAGTTTAACCGAGAAGCTGATGGTTCCTTGAAACCTCTGCCTTCCAAACACGTGGATACTGGAATGGGTTTTGAAAGATTGACTTCAATTCTTCAGAACAAGATGAGCAACTATGATACTGATGTCTTCATGCCCATTTTTGATGCTATTCAACAGGCAACTGGCGCTAGACCATATTCAGGGAAAGTTGGTGCAGATGATCTGGATGGAATTGACATGGCATACAGAGTTGTTGCCGACCACATTAGGACTCTTTCATTTGCCATCGCAGATGGTTCTTGTCCAGGCAATGAAGGGCGTGAATATGTTTTGCGACGCATTCTTCGCAGAGCTGTTCGCTATGGAACAGAAGTACTGAAAGCAAAGCAAGGATTTTTTAATGGATTGGTAAAAGTTGTGGTGGATGTAATGAGCCATGTCTTTCCTGAGTTAAAGCAGCAAGAGGCACACATTAGAGAGATCATAGCAGAAGAGGAAGCAAGTTTTGGAAGAACGTTAGTCCATGATGCATTTGTGTTGTGGGACACTTTTGGATTTCCATTGGATCTGACTCAGTTGATGGCAGAAGAAAGAAAGTTGGAGGTTGATGTTGAGGGTTTCAACATTGCTATGAAAGAAGCTAGAGAACGATCAAGAAACGCCCAGAATAAGCAAGCTGCTGTTGCTATTGTCATGAATGCAGATGCCACCTCTGCACTGCATAAGAGAGGAATTGCCACAACAAATGATAGTTTCAAGTTTACATGGTTTCAGGACCACAAAAGCGTGATCAAAGCCATTTACACAGGGAGCGAGTACGTGGAACATGCTGCTGTCGGCGATGATGTTGGTATTATTCTTGAGAGCACAAGTTTTTATGCTGAGCAAGGTGGTCAGATATATGATACTGGAGTACTTGGAGGCCCCTCTGGATCGTTTGAAGTTTGTAATGTTCAAGTTTATGGAGGTTTTGTGCTTCATCTTGGTAAAATTGCAAACGAATCTGGAAAATTCAGCGTGGGAGATGAAGTTATTTGTAAGGTTGACTATGACAGGCGTCAACGCATTGCTCCTAACCATACCTGTACACACATGTTAAATTTCGCTCTCCGGGAAGTACTTGGGAATCATGTTGACCAGAAAGGATCCATTGTTCTTCCAGAGAAATTAAGATATGACTTTTCCCATGGGAAGCCTGTAAAGCCGGAAGACCTCCGCAAGATTGAAGCCATTGTAAACGAGCAAATTAAAGCCGAACTAGATGTTTCTGCAAAGGAGGCAAGCCTTGCTGATGCTAAGCGTGTAAATGGATTGCGAGCAGTTTTTGGTGAAGTGTATCCCGATCCCGTTAGGATTGTTGCAATTGGTCGAAAAGTAGAAGATCTCTTGGCTGATCCTGAAAGTGAAGAGTGGCTGTCCATATCTGCAGAGCTTTGTGGAGGGACCCATATTACAAATACACGAGAAGGCAAGGCATTTGCACTTTTATCTGAGGAGGGAATTGCAAAGGGGATTCGGAGAGTAACTGCTGTAACAACAGACTATGCATTTGAGGCTATGAAAAAGGCATCTGAACTCGAACAAGAAGTTGATCAGGCATCAAAGCTAGAAGGAAGCCTTCTTGAACAGAAAGTGACCTCTTTAAATGGTCAAGTAGAGTCGGCCGCTATTCCAACAGCAAAAAAAACTGATCTTAAGGCCAAAATCTCAATCCTTCAGAATCAAGTAATAAAAGCAAAAAAGAAGATTGCTGAAGAGAACATACGCAAAGCCGTTGAGGCAGCCACTAAAGCCGCAGAAGTTGCCTCTTCTGAGGGGAAGACCTTTTGCATTTCAAATGTTGATGTGGGTTCGGATACTGCTGCTATTCGCGAAGCAGTTGTTAAAGTCATGGAGCAGAAGGGATTGGCGGTGATGGTTTTTAGCACTGATGAAGAATCAAAGAAGGCCTTAGTTTGTGCTGGTGTGCCGGAAAAAAGCGATAACAGCAACCGCCTGAAGGTTTTAGAGTGGCTGAAGGCTGCGTTGAAGCCACTTGAAGGCAAAGGTGGTGGAGGGAAAGGTGGTCTTGCTCAAGGCCAGGGACCCGATATCAAGCATGTAGATGAAGCAATAGACGTGGCCAAGTCATTTGCAGCGCTCAAACTGGGTTGAAAGCGGAAATTTGTCACGTTTTACCGAAAACCGTCTTGTGTTGAATTGCGAAACAAGTAAACGCACCCAACGGTTGGTTGGGTTGTGGGAAAGGAAAAGGAAAAATTGATTTGTACCCGTTTGCTATTTGACCCAATACAATGGATTGTTTCAATCATCTCTATACAAATGCTGTTGAATTTCAAGATTGTATTTACTTTTGTATACGAGTAAATTGATTGTTTTTCTTTTAAGTGTTTTGAGTAGTAGAGAGTCTGAATGATATAAAGTCATCTTTTCAGTCTTTTAGTAGTCCAATTCCTTTAAAGATTATGCTCTTTGGTTTAAGAGTTTGAGTAAAATTTGCTTAAGGGTGTATTTGGTATATAATAAATAAACCTCGGAAAACTATAAG 3525 43.21 MRVHIARNLNSAFDYRRFVASSISSISSLRPPAAADCSLANIRTKSCLSALGRFNLSTVAAVRDSKTMGSLAGEVEWPANKVRDSFIKFFEEKNHVYWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTSLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKHEAIGWAWELLTTVFKLPTDRIYATYFGGDEKLGLPADNEAKEIWLKYLPAKRVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGGRDAAELVNNDDPTLIEIWNVVFIQFNREADGSLKPLPSKHVDTGMGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDLDGIDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGTEVLKAKQGFFNGLVKVVVDVMSHVFPELKQQEAHIREIIAEEEASFGRTLVHDAFVLWDTFGFPLDLTQLMAEERKLEVDVEGFNIAMKEARERSRNAQNKQAAVAIVMNADATSALHKRGIATTNDSFKFTWFQDHKSVIKAIYTGSEYVEHAAVGDDVGIILESTSFYAEQGGQIYDTGVLGGPSGSFEVCNVQVYGGFVLHLGKIANESGKFSVGDEVICKVDYDRRQRIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRYDFSHGKPVKPEDLRKIEAIVNEQIKAELDVSAKEASLADAKRVNGLRAVFGEVYPDPVRIVAIGRKVEDLLADPESEEWLSISAELCGGTHITNTREGKAFALLSEEGIAKGIRRVTAVTTDYAFEAMKKASELEQEVDQASKLEGSLLEQKVTSLNGQVESAAIPTAKKTDLKAKISILQNQVIKAKKKIAEENIRKAVEAATKAAEVASSEGKTFCISNVDVGSDTAAIREAVVKVMEQKGLAVMVFSTDEESKKALVCAGVPEKSDNSNRLKVLEWLKAALKPLEGKGGGGKGGLAQGQGPDIKHVDEAIDVAKSFAALKLG 1001
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00077 1001 NCBIfam alanine--tRNA ligase 81 979 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Cati3g00077 1001 FunFam Alanine--tRNA ligase, cytoplasmic 633 808 - -
Cati3g00077 1001 Gene3D - 886 996 - -
Cati3g00077 1001 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 734 792 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Cati3g00077 1001 SUPERFAMILY Translation proteins 562 632 IPR009000 -
Cati3g00077 1001 Coils Coil 800 827 - -
Cati3g00077 1001 FunFam Alanine--tRNA ligase 531 631 - -
Cati3g00077 1001 Hamap Alanine--tRNA ligase [alaS]. 77 1000 IPR023033 GO:0004813(InterPro)
Cati3g00077 1001 Gene3D Bira Bifunctional Protein; Domain 2 78 326 IPR045864 -
Cati3g00077 1001 Pfam tRNA synthetases class II (A) 81 457 IPR018164 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Cati3g00077 1001 Pfam tRNA synthetases class II (A) 460 636 IPR018164 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Cati3g00077 1001 Pfam DHHA1 domain 849 995 IPR003156 GO:0003676(InterPro)
Cati3g00077 1001 Gene3D - 633 809 - -
Cati3g00077 1001 Coils Coil 488 508 - -
Cati3g00077 1001 CDD AlaRS-core 79 325 - -
Cati3g00077 1001 SUPERFAMILY ThrRS-AlaRS common domain 632 804 IPR018163 GO:0000166(InterPro)
Cati3g00077 1001 PRINTS Alanyl-tRNA synthetase signature 155 166 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Cati3g00077 1001 PRINTS Alanyl-tRNA synthetase signature 391 404 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Cati3g00077 1001 PRINTS Alanyl-tRNA synthetase signature 310 323 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Cati3g00077 1001 PRINTS Alanyl-tRNA synthetase signature 283 294 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Cati3g00077 1001 PRINTS Alanyl-tRNA synthetase signature 367 383 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Cati3g00077 1001 SMART tRNA-SAD-4 734 793 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Cati3g00077 1001 FunFam Alanine--tRNA ligase 888 996 - -
Cati3g00077 1001 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 330 513 IPR018162 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro)
Cati3g00077 1001 Gene3D - 558 632 - -
Cati3g00077 1001 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 77 806 IPR018165 GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Cati3g00077 1001 FunFam Alanine--tRNA ligase, cytoplasmic 76 326 - -
Cati3g00077 1001 PANTHER ALANYL-TRNA SYNTHETASE 74 997 IPR050058 GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005739(PANTHER)|GO:0006419(PANTHER)|GO:0009507(PANTHER)
Cati3g00077 1001 SUPERFAMILY Class II aaRS and biotin synthetases 78 329 IPR045864 -
Cati3g00077 1001 Coils Coil 846 878 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00077 K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
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Event-related genes

Select Gene_1 Gene_2 Event_name
35461 Cati3g00077 Cati7g03391
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
895816 Cati Cati3g00077 Cati-Chr3:346033 Cati7g03391 Cati-Chr7:71138884