AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00123 GAAAAAGTTGCTCTTCAGTCCTTGAAGGCCAGTGAATGGCATCTTGATGGAGCATTTGATGTATTCTACAGCCAACCTCACACCAAATCGTTTACAGATACGAGACATTTAGAGGAATTGTACAATAGATACAAAGGCACGTCATCTGCCTGCCTTCATGATCCCATTCTCATCTTATATCAGAGTGGTGCTGTTGCCCGATTAGACAGTGGCAGCTTGGTTTTTGATCCTTATGCTGATATGATTATGGCTGATGGTATTAGTACCCTCTGCAATGATGTTCAGGTGGATCCTCAAGATATTGTTATGTTGGTTGTTTCTTGGCACATGAAGGCTGCTACCATGTGTGAATTCTCAAAGCAGGAATTTGTTGGTGGCTTGCAAGCTCTTGGGATAGATTCACTGGAGAAATTCCGTGAACGGATACCATTCATGCGTTCTGAGCTGAAAGATGATCAAAAATTCAAGGAGATATACAATTTTGCATTCGGCTGGGCAAAGGAGAAGGGTCAGAAGTCTCTGGCATTGGATACAGCAATAGGGATGTGGCAACTGCTGTTTGAAGAAAAGCAATGGCCATTGGTTGATCATTGGTGCCAGTTCTTACAGGCACGGCATAATAAAGCTATTTCTCGAGACACTTGGTCTCAGCTACTGGAATTTGCAAGAAGTGTGGATCCTACACTATCGAATTATGATGCTGAAGGTGCGTGGCCGTATCTAATCGATGAATTTGTCGAGTATTTAACAGAAAACAACATAATTCAAAAGGGTCATCATGTGAAAGATTGGGGTCAGAAGTTCTAAGAGTCCAGATTTGGTCTGCTTCTTCATTTGCAAGTAAGTCTCGCATCGATTCATCATTGAAAAACCGAAATATATGTATAAAACACAAAAAAGGAAGTAGCTTGTGTATGAATTATGATGGCTGGGCGATTGTTAGAACTTTTAATTCATTTGTCAAAAACCTTCGAGGAGTTTGTTTGGTTTGGATTCGTTTTTATTGCATTTTATATGTTTAAGTAATTGAAAAAAATGGAAGTCATTGTTTAAATGTTTGAT 1062 39.64 EKVALQSLKASEWHLDGAFDVFYSQPHTKSFTDTRHLEELYNRYKGTSSACLHDPILILYQSGAVARLDSGSLVFDPYADMIMADGISTLCNDVQVDPQDIVMLVVSWHMKAATMCEFSKQEFVGGLQALGIDSLEKFRERIPFMRSELKDDQKFKEIYNFAFGWAKEKGQKSLALDTAIGMWQLLFEEKQWPLVDHWCQFLQARHNKAISRDTWSQLLEFARSVDPTLSNYDAEGAWPYLIDEFVEYLTENNIIQKGHHVKDWGQKF 268
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00123 268 Gene3D - 33 150 - -
Cati3g00123 268 Gene3D Cullin, PONY binding domain 151 259 IPR042460 -
Cati3g00123 268 ProSiteProfiles DCUN1 domain profile. 32 250 IPR005176 -
Cati3g00123 268 PANTHER RP42 RELATED 2 252 IPR014764 GO:0000151(PANTHER)|GO:0031624(PANTHER)|GO:0032182(PANTHER)|GO:0045116(PANTHER)|GO:0097602(PANTHER)
Cati3g00123 268 FunFam Defective in cullin neddylation protein 151 256 - -
Cati3g00123 268 Pfam Cullin binding 138 248 IPR005176 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00123 K17822 DCN1-like protein 1/2
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:608323 Cati3g00123 Cati-Chr3:610039 tandem