AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cati3g00132 | ATGGAACCCATTAACCATTTTGGGTTCCCTTTCAACAACATTCATCAACACCTCCCGATTCGCCAGTTTTCGCAAGCGGCCCGTGTTGAAGAATCATGGGAACTATTGCACCACCTTGATGATCAAGCTCATCAACCTAAAATGGCAGCCACTTCTGCAGATTCAATGGAGGAGTACCAATTTGTTGATAGTTTCTTTAACATTGATCATATCCACTTGCCATCTTCACCTGAAGAGAATAATCACCTGGTTCAGCCGTTTGACTCGCTGTTCCACGATGTTGACCTTGATGGCTTCTTGATGCCCGATGATGATCCTATGATGATGATGATGATCCAAGACGAGTACGAGATGGTCGATCTGAGCAGCTCGTGTGAAGACACCGCTTTCGTTTCTTCACTCTCGTCGTCATCGTTATCAGACATTTCTGTTCAGCCCGTCTACGATAATAAGCCCATCGACGATCAGGACCACGATCGTCTGAATGTGAACGGTGTCGATGACGGGCTTCAGCTCGTGCACTTGCTACTGGCGTGTGCGGAGGCGGTGGGTTGCCGGGACACCCAACTTGCCGAGTCAATCCTATCGAAGATTTGGTACTCGGCAAACCCGTTGGGCGATTCGTTACAACGGGTGTCGTACTGTTTCGCTGACGGGCTGAAATCAAGACTATCCCTTTTGCAGACCAACGTGAATGCAAACGGTACGATTTCAATGTCGAACGATTGCGGGCGAGTGGCGAATCCAACCGATATCAAAAGGGAAGATAGAATCGAAGCTTTTCGGTTGCTACATCAAACGACACCGTATATAGAATTTGGATTCATCGCTGCAAACGAAGCCATATTTCAAGCAGCAAAAGGGAAGGAGTTTTTGCATATTATCGATCTGGGAATGGAGCACACGTTACAGTGGCCATCGCTGATACGAACGCTAGGTTCGACCACGAAGCGAATCCGGATCACGGGAATTTTGGGAGATCGAGGGGATGCGACGGAGTTGGAATCCAACATGGAAAAAAGCGTAATCCCGGAAGCGAATTCGGTCGGAATCGAGGTGGAGTTTCGGCTGATTAACGGACCAGCCACACCGGGAATGTTAACGAGAGAGAATTTACGATTAAAAGACGAAGAAACGCTGTTTGTAAACAGCGTACTCCACTTGCATACCTACGTCAAGGAGAGCCGTGGGTCGTTGAAAACCGTACTCCAGGCGGTCAAGAAGTTGGGGCCGGCACTTTTGACGGTGGTGGAGCAAGACGCGAACCACAACGGGCCGTTTTTTCTCGGGAGGTTTCTGGAATCGCTGCATTACTACTCGGCTATATTCGACTCTCTGGAGGCTAGCATGGGGAGGGACAGCGTGGAGAGGCTGAAGATAGAGCGGAACCACTTCGCGGAGGAGATAAGGAACATAGTGGCGTACGAGGGGACGGAGAGGGTGGAGCGGCACGAGAGGGCGGATCAGTGGCGGCGGCAGCTAGGGAGGGCGGGGTTTCAGGTGGTGGCGGGAGTGAAGGGGCGGCAAGCGACCGCCATGAGGATTGTGAACGGCTGTGATGGGTATACGGTTGGGATTGATCAGAAAGGGCATGTGTTGCTTGGCTGGAAAGGGAGACCGATAATGCTTGCCTCTGCTTGGCAACCCAGCTCGACATAG | 1659 | 51.12 | MEPINHFGFPFNNIHQHLPIRQFSQAARVEESWELLHHLDDQAHQPKMAATSADSMEEYQFVDSFFNIDHIHLPSSPEENNHLVQPFDSLFHDVDLDGFLMPDDDPMMMMMIQDEYEMVDLSSSCEDTAFVSSLSSSSLSDISVQPVYDNKPIDDQDHDRLNVNGVDDGLQLVHLLLACAEAVGCRDTQLAESILSKIWYSANPLGDSLQRVSYCFADGLKSRLSLLQTNVNANGTISMSNDCGRVANPTDIKREDRIEAFRLLHQTTPYIEFGFIAANEAIFQAAKGKEFLHIIDLGMEHTLQWPSLIRTLGSTTKRIRITGILGDRGDATELESNMEKSVIPEANSVGIEVEFRLINGPATPGMLTRENLRLKDEETLFVNSVLHLHTYVKESRGSLKTVLQAVKKLGPALLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASMGRDSVERLKIERNHFAEEIRNIVAYEGTERVERHERADQWRRQLGRAGFQVVAGVKGRQATAMRIVNGCDGYTVGIDQKGHVLLGWKGRPIMLASAWQPSST | 552 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cati3g00132 | 552 | ProSiteProfiles | GRAS family profile. | 163 | 548 | IPR005202 | - | |
| Cati3g00132 | 552 | PANTHER | OSJNBA0084A10.13 PROTEIN-RELATED | 143 | 547 | IPR005202 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
| Cati3g00132 | 552 | Pfam | GRAS domain family | 172 | 548 | IPR005202 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cati3g00132 | K27752 | GRAS family protein RAD1 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cati | Cati-Chr3:652621 | Cati9g00638 | Cati-Chr9:5518375 | dispersed | |
| Cati | Cati-Chr3:652621 | Cati5g01454 | Cati-Chr5:17609865 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cati10g00006 | . | 20 | 400 | GRAS Transcription Factor family | AT5G41920 | 55.699 | 1.08e-140 | 417.0 | |
| Cati10g00669 | ACH | 22 | 767 | GRAS Transcription Factor family | AT1G07530 | 49.337 | 0.0 | 663.0 | |
| Cati10g01051 | . | 296 | 601 | GRAS Transcription Factor family | AT3G54220 | 55.663 | 1.04e-117 | 358.0 | |
| Cati10g01572 | . | 456 | 482 | GRAS Transcription Factor family | AT1G50420 | 59.259 | 9.12e-07 | 45.8 | |
| Cati10g01957 | . | 107 | 321 | GRAS Transcription Factor family | AT5G17490 | 29.279 | 1.45e-14 | 74.3 | |
| Cati10g02455 | . | 231 | 322 | GRAS Transcription Factor family | AT5G66770 | 47.368 | 7.48e-19 | 84.0 | |
| Cati11g00035 | . | 144 | 507 | GRAS Transcription Factor family | AT1G66350 | 44.271 | 5.66e-98 | 310.0 | |
| Cati11g00643 | . | 12 | 456 | GRAS Transcription Factor family | AT1G50420 | 36.607 | 1.13e-92 | 287.0 | |
| Cati11g02936 | . | 147 | 546 | GRAS Transcription Factor family | AT3G03450 | 30.952 | 7.88e-55 | 190.0 | |
| Cati11g03005 | ACH | 128 | 555 | GRAS Transcription Factor family | AT4G00150 | 41.522 | 1.31e-97 | 310.0 | |
| Cati12g02183 | ACH | 7 | 767 | GRAS Transcription Factor family | AT1G07530 | 44.757 | 0.0 | 595.0 | |
| Cati12g02538 | . | 91 | 680 | GRAS Transcription Factor family | AT2G37650 | 51.262 | 0.0 | 594.0 | |
| Cati1g00434 | . | 8 | 409 | GRAS Transcription Factor family | AT3G49950 | 60.19 | 0.0 | 514.0 | |
| Cati1g00450 | . | 1 | 530 | GRAS Transcription Factor family | AT4G37650 | 55.098 | 0.0 | 559.0 | |
| Cati1g00615 | . | 126 | 486 | GRAS Transcription Factor family | AT4G36710 | 56.649 | 2.38e-134 | 395.0 | |
| Cati1g00644 | . | 1 | 584 | GRAS Transcription Factor family | AT5G66770 | 55.369 | 0.0 | 570.0 | |
| Cati2g00066 | . | 83 | 555 | GRAS Transcription Factor family | AT4G00150 | 38.545 | 1.63e-99 | 313.0 | |
| Cati2g01231 | . | 193 | 257 | GRAS Transcription Factor family | AT3G50650 | 46.377 | 1.59e-12 | 63.5 | |
| Cati3g00014 | . | 118 | 489 | GRAS Transcription Factor family | AT5G48150 | 63.003 | 5.02e-168 | 483.0 | |
| Cati3g00132 | . | 147 | 506 | GRAS Transcription Factor family | AT1G66350 | 34.518 | 2.69e-62 | 211.0 | |
| Cati3g00292 | . | 64 | 490 | GRAS Transcription Factor family | AT5G48150 | 63.616 | 0.0 | 570.0 | |
| Cati3g00718 | ACH | 1 | 490 | GRAS Transcription Factor family | AT5G48150 | 58.266 | 0.0 | 559.0 | |
| Cati3g02747 | . | 296 | 504 | GRAS Transcription Factor family | AT4G37650 | 41.284 | 7.83e-45 | 155.0 | |
| Cati5g00332 | . | 27 | 529 | GRAS Transcription Factor family | AT1G14920 | 48.249 | 2.21e-158 | 460.0 | |
| Cati5g01324 | . | 178 | 546 | GRAS Transcription Factor family | AT3G03450 | 28.941 | 1.88e-53 | 188.0 | |
| Cati5g01454 | ACH | 27 | 490 | GRAS Transcription Factor family | AT5G48150 | 64.496 | 0.0 | 602.0 | |
| Cati6g02584 | . | 449 | 521 | GRAS Transcription Factor family | AT5G52510 | 60.274 | 6.04e-22 | 88.2 | |
| Cati6g03065 | . | 1 | 593 | GRAS Transcription Factor family | AT1G21450 | 54.726 | 0.0 | 612.0 | |
| Cati7g00536 | . | 28 | 582 | GRAS Transcription Factor family | AT2G01570 | 62.653 | 0.0 | 691.0 | |
| Cati7g01553 | ACH | 605 | 676 | GRAS Transcription Factor family | AT2G37650 | 56.944 | 3.04e-24 | 95.1 | |
| Cati8g00143 | . | 31 | 640 | GRAS Transcription Factor family | AT5G52510 | 42.405 | 3.67e-130 | 394.0 | |
| Cati8g00742 | ACH | 86 | 768 | GRAS Transcription Factor family | AT1G07530 | 45.138 | 0.0 | 568.0 | |
| Cati9g00116 | . | 1 | 510 | GRAS Transcription Factor family | AT3G13840 | 46.704 | 1.91e-145 | 426.0 | |
| Cati9g00638 | . | 165 | 529 | GRAS Transcription Factor family | AT1G14920 | 35.325 | 8.71e-72 | 238.0 | |
| Cati9g01899 | . | 64 | 490 | GRAS Transcription Factor family | AT5G48150 | 64.583 | 0.0 | 580.0 | |
| Cati9g02747 | . | 283 | 348 | GRAS Transcription Factor family | AT5G66770 | 72.727 | 1.09e-28 | 108.0 | |
| Cati9g03883 | ACH | 20 | 707 | GRAS Transcription Factor family | AT1G07530 | 47.391 | 0.0 | 572.0 | |
| Cati9g03884 | ACH | 300 | 764 | GRAS Transcription Factor family | AT1G07530 | 50.74 | 2.59e-165 | 489.0 | |
| Cati9g03885 | . | 316 | 758 | GRAS Transcription Factor family | AT1G07530 | 49.21 | 1.07e-147 | 458.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Cati | GRAS | 9.7e-95 | CL0063 | TF | GRAS |