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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00141 ATGTGTAAAAGCCTGAAAAAGGCTTCTAATGGTGTTGTAATTGCAACAGAAAAGAAACTCCCATCCATTTTAGTTGATGAGACCTCTGTGCAAAAGATTCAGATTTTGACTCCTAACATTGGAGTTGTATACAGTGGCATGGGGCCCGATTCTCGAGTTCTGGTCAGAAAGAGTAGGAAGCAGGCAGAGCAGTACAATCGGCTTGGTGTAAGGCCTTTTGGTGTCTCACTCCTTGTTGCCGGTTTTGATGACAAGGGTCCCCAGCTATATCAGGTGGATCCCTCAGGATCATATTTCTCCTGGAAAGCTTCGGCCATGGGAAAGAACGTGTCCAATGCTAAGACATTTCTTGAAAAGAGGTACACCGATGATATGGAGCTTGAGGATGCGATACACACGGCTATCTTAACATTGAAGGAGGGAGTCCTAACTGCTGCTCAAATTGAAGACTATCTTCAGGAGGTGGAATAGTTATTTGTCATCTTATTAAAACATTGAACAATTGTTTCTTTTTTGGTCTGTCTTGTAATATTCGGTCTTGTTTTGGTGAACATTGAACAATTGTTCTTGTGTTGTCGTGTTCTGTCGTATCTCGTGTTGTCCTGTTCTGTTTGGGTACCCAACACACCTTAGGGGTGCGTTTGGTATCGGGACATGATGAAACAAAACATGATAGGACAGAACTAACTTATCTCTAATGAG 702 42.45 MCKSLKKASNGVVIATEKKLPSILVDETSVQKIQILTPNIGVVYSGMGPDSRVLVRKSRKQAEQYNRLGVRPFGVSLLVAGFDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDDMELEDAIHTAILTLKEGVLTAAQIEDYLQEVE 156
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00141 156 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 66 155 IPR029055 -
Cati3g00141 156 ProSiteProfiles Proteasome alpha-type subunit profile. 1 156 IPR023332 -
Cati3g00141 156 Pfam Proteasome subunit 7 66 IPR001353 GO:0005839(InterPro)|GO:0051603(InterPro)
Cati3g00141 156 Pfam Proteasome subunit 67 141 IPR001353 GO:0005839(InterPro)|GO:0051603(InterPro)
Cati3g00141 156 PANTHER PROTEASOME SUBUNIT ALPHA-BETA 7 66 IPR050115 GO:0010498(PANTHER)|GO:0019773(PANTHER)
Cati3g00141 156 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 6 65 IPR029055 -
Cati3g00141 156 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 7 142 IPR029055 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00141 K02726 20S proteasome subunit alpha 2 [EC:3.4.25.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:789871 Cati3g01968 Cati-Chr3:57460263 dispersed
Cati Cati-Chr3:765505 Cati3g00141 Cati-Chr3:789871 tandem