AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cati3g00153 | AAATACATATATAAATATATATATATATATACATATATATATACATACATTTGCATGCACTTGGAGAATTAGTTTAACTTGAAGGTGGTTTAATATATATCATTTGTTTCAATTCAATTCAAGTCAATGAAGGATGGCGGGAGTAGTGGCGGCGGAAGAAAACAAGGGGCGGCATCGCCTTGTGCCGCTTGCAAGCTTTTAAGGAGACGATGCTCTCAAGATTGCGTTTTCGCGCCTTACTTTCCGGCGGACGAGCCCCAGAAGTTCGCAAGTGTCCATAAGGTTTTTGGTGCTAGCAACGTCAACAAGATGCTTCAGGAATTACCTGAGCATCATAGAGGCGATGCTGTGAGCTCAATGGTGTATGAAGCAAACGCACGGATCAGGGATCCAGTGTACGGTTGTGTAGGGGCAATATCGTCCCTACAACAACAAATAGACGTACTTCAAGCACAACTGGCAGTGTCACAGGCAGAAGTGGTTCACATGAGAATGCGCCAGTTCTCGTCAAGCCCCGTCAATCAGTCGCCAGAAAACATATCGCCGCCGTCGCGCCACCACCCATCACATACACCAACTAGGTCCCTTTTTGGCATGGACATGGTGGTTGACCACCAAAATCATATGGGCATGGGGGAGTCCTTATGGTCCTCATGCAACTAGCAACCATCTTTTTACTACTATTTTGTTATAATTGAGGCTTCTTTGTTGCTTGCCGGATTTTCTATATTTTTCATTTTCTTATTTATATTATATTATACTATATATATTTATATATAATATATATCTCTCTCCACTGTATTGTGAGATGAAGATGATGATGATGTTGTTGACGATATATGATTAACCATATTGTAAATTTTTAATTGTGG | 872 | 40.83 | MKDGGSSGGGRKQGAASPCAACKLLRRRCSQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHHRGDAVSSMVYEANARIRDPVYGCVGAISSLQQQIDVLQAQLAVSQAEVVHMRMRQFSSSPVNQSPENISPPSRHHPSHTPTRSLFGMDMVVDHQNHMGMGESLWSSCN | 178 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cati3g00153 | 178 | MobiDBLite | consensus disorder prediction | 126 | 149 | - | - | |
| Cati3g00153 | 178 | Coils | Coil | 97 | 117 | - | - | |
| Cati3g00153 | 178 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 16 | 137 | - | - | |
| Cati3g00153 | 178 | ProSiteProfiles | LOB domain profile. | 17 | 118 | IPR004883 | - | |
| Cati3g00153 | 178 | Pfam | Lateral organ boundaries (LOB) domain | 18 | 115 | IPR004883 | - | |
| Cati3g00153 | 178 | MobiDBLite | consensus disorder prediction | 126 | 153 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cati3g00153 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cati | Cati-Chr11:11274734 | Cati3g00153 | Cati-Chr3:1112870 | dispersed | |
| Cati | Cati-Chr1:3512550 | Cati3g00153 | Cati-Chr3:1112870 | dispersed | |
| Cati | Cati-Chr3:1112870 | Cati9g03702 | Cati-Chr9:80207451 | dispersed | |
| Cati | Cati-Chr3:1112870 | Cati8g00913 | Cati-Chr8:7281346 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cati10g01078 | ACH | 1 | 123 | AS2 family | AT2G42440 | 70.161 | 1.96e-58 | 183.0 | |
| Cati10g01079 | ACH | 1 | 245 | AS2 family | AT2G42430 | 54.032 | 4.77e-74 | 223.0 | |
| Cati10g02706 | . | 2 | 108 | AS2 family | AT5G06080 | 70.093 | 1.04e-51 | 161.0 | |
| Cati10g03260 | . | 1 | 199 | AS2 family | AT1G65620 | 62.821 | 4.68e-75 | 224.0 | |
| Cati11g00246 | . | 27 | 140 | AS2 family | AT3G47870 | 55.652 | 4.61e-37 | 132.0 | |
| Cati11g00762 | . | 1 | 117 | AS2 family | AT3G26660 | 59.677 | 1.10e-50 | 168.0 | |
| Cati11g00875 | . | 1 | 117 | AS2 family | AT3G26660 | 48.78 | 1.79e-34 | 114.0 | |
| Cati11g02498 | ACH | 7 | 161 | AS2 family | AT3G03760 | 68.387 | 1.53e-67 | 207.0 | |
| Cati1g00098 | . | 33 | 144 | AS2 family | AT3G27650 | 81.25 | 2.13e-68 | 202.0 | |
| Cati1g00353 | . | 1 | 257 | AS2 family | AT5G66870 | 57.836 | 1.32e-85 | 259.0 | |
| Cati1g00436 | ACH | 1 | 249 | AS2 family | AT5G67420 | 52.59 | 5.47e-69 | 209.0 | |
| Cati3g00153 | . | 6 | 171 | AS2 family | AT1G31320 | 70.0 | 9.99e-70 | 207.0 | |
| Cati3g01159 | ACH | 1 | 132 | AS2 family | AT3G49940 | 76.515 | 3.79e-68 | 207.0 | |
| Cati3g02253 | ACH | 40 | 243 | AS2 family | AT2G45420 | 60.096 | 2.41e-71 | 217.0 | |
| Cati3g02258 | ACH | 1 | 123 | AS2 family | AT4G00210 | 60.484 | 6.07e-49 | 155.0 | |
| Cati4g02274 | ACH | 51 | 137 | AS2 family | AT3G03760 | 79.31 | 2.20e-46 | 157.0 | |
| Cati5g01184 | ACH | 62 | 142 | AS2 family | AT3G49940 | 61.728 | 2.95e-28 | 105.0 | |
| Cati5g01818 | ACH | 35 | 172 | AS2 family | AT3G13850 | 60.274 | 8.03e-52 | 171.0 | |
| Cati6g00512 | ACH | 10 | 253 | AS2 family | AT3G03760 | 53.878 | 2.30e-75 | 228.0 | |
| Cati6g02517 | ACH | 9 | 209 | AS2 family | AT4G00210 | 52.475 | 3.22e-58 | 180.0 | |
| Cati6g02522 | ACH | 40 | 244 | AS2 family | AT2G45420 | 55.399 | 1.11e-64 | 200.0 | |
| Cati6g03471 | ACH | 35 | 246 | AS2 family | AT3G13850 | 40.989 | 1.31e-51 | 175.0 | |
| Cati6g03472 | . | 35 | 152 | AS2 family | AT3G13850 | 63.077 | 4.77e-48 | 163.0 | |
| Cati6g04007 | . | 1 | 136 | AS2 family | AT4G37540 | 52.206 | 4.00e-42 | 140.0 | |
| Cati6g04414 | . | 27 | 140 | AS2 family | AT3G47870 | 60.526 | 8.22e-45 | 153.0 | |
| Cati8g00458 | . | 5 | 117 | AS2 family | AT2G30130 | 88.496 | 1.46e-70 | 211.0 | |
| Cati8g02143 | . | 3 | 247 | AS2 family | AT5G66870 | 52.988 | 8.33e-76 | 232.0 | |
| Cati8g02216 | ACH | 1 | 239 | AS2 family | AT4G37540 | 56.379 | 3.04e-79 | 238.0 | |
| Cati9g01320 | . | 1 | 136 | AS2 family | AT4G37540 | 56.643 | 3.70e-51 | 162.0 | |
| Cati9g03271 | ACH | 7 | 245 | AS2 family | AT2G42430 | 56.904 | 6.53e-79 | 234.0 | |
| Cati9g03702 | . | 3 | 193 | AS2 family | AT2G30130 | 69.231 | 3.31e-85 | 247.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Cati | LOB | 3.4e-43 | No_clan | TF | LOB |