AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00167 GTTTTAAGTAACCAGTTGACCGATTTGGACCGGACCAAGACCTGTCCCATTCGACCATCATCTCTAGCATCACGTTTCGTCATCTTAAACCGGAATCTGCCTTTTTATGGGCCCAAGTCATAATAAATTAAAACTCTGGGCCTAAACCCAGGCCCATTTCAGATTGCCAACTAGGCAAAAAAGTGGGTCCCACCAGCATCCTTTTACGAATGGGATGCTGCTGACGTGGCAGGATCAGCTGGGAGGATAAGCCGACGGCGAGACTAAAGCGTAAAAAAAAAAAAAAAAAATCCATATCCTCAACTGTATCTACTACCGATCTCTTTCTCCCCCTCCCCCAAATCTTTTTTCTAGATGGAGACCTTGGCGCCTTCGAATCAAGCCCTAGTTTCCGCCAATTTCACCTCCAGATCCGTTTCCGCCACCGGATTCTCTCTGCCGTGCCTCAAGTCTCCGGCGCAATGCCTCCGCCGCCGGAAGCCGGCGGCGATTAAGGCGTCGGTTGCCGTGGAGCAGCAGCAGACGCAGACGAAGGTCGCGATTGTCAGAATTGGAACTAGAGGAAGCCCATTAGCCCTTGCACAGGCTTATGAGACACGCGATAAACTTATGGCTACTAGTAGCGAGTTGGCAGAAGAGGGGGCTATTCAGATTGTGGTGATTAAGACAACAGGTGATAAAATACTGACTCAACCTCTTGCAGATATTGGTGGGAAGGGTTTGTTCACTAAAGAAATAGATGAAGCGCTTCTAAATAGTGAAATTGACATTGCTGTTCATTCAATGAAAGACGTTCCTACTTATTTGCCCGAGAAAACAATTTTGCCCTGCAATCTTCCTCGCGAGGATGTCCGTGATGCATTTATTTCATTGAATGCAAGTTCATTAGCTGATCTTCCAGCTGGAAGCGTTGTGCTGGAAAATTTTCGAGGCAACGTGCAAACCAGGTTAAAGAAACTAAATGAAGGGGTCGTCCAAGCAACATTATTAGCATTAGCCGGACTCAAACGCTTAAGTATGACTGAGCATGTGAGTGCCATTCTTTCTATTGATGACATGCTTCCTGCTGTTGCACAAGGTGCAATTGGGATCGCTTGTCGAAGTGATGACGATAAGATGGCTAATTACATTGCAAAGTTGAACCATGAAGAAACACGATTAGCAGTTGCATGTGAGAGGGCATTCCTATTGACACTTGATGGATCTTGTAGGACACCCATAGCTGGATATGCTTGTAGAGATGAGGATGTACTGGAAACTTCTAGAAAAGGACTGTATTCTTACGACGATATGATTCTGATGGGGGAGGATGCCGGCAAGGAACTACTGTCACGTGCGGGCCCGGGTTTTTTTGATAGTTGAGGTCTTCGAACACGGATTGTTAGCTTCTGGTGAGTTGTTTTTCGGTTTATTGTTACGGACAATCGTAGATTATAGATTTCTTGTATCATTCCTGTAATGTTAAGAATAGCATATTCCTAAGATTAGTTTCCAAGACTCCTAATAAGTATTCTTTAAAGGCAATCATATCCCCATTTTTTCTGCCTTTTGCTTGTGTTATAAAAAAAGTCAAACCAAACTGACTCAGTATATCCCA 1597 44.58 METLAPSNQALVSANFTSRSVSATGFSLPCLKSPAQCLRRRKPAAIKASVAVEQQQTQTKVAIVRIGTRGSPLALAQAYETRDKLMATSSELAEEGAIQIVVIKTTGDKILTQPLADIGGKGLFTKEIDEALLNSEIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFISLNASSLADLPAGSVVLENFRGNVQTRLKKLNEGVVQATLLALAGLKRLSMTEHVSAILSIDDMLPAVAQGAIGIACRSDDDKMANYIAKLNHEETRLAVACERAFLLTLDGSCRTPIAGYACRDEDVLETSRKGLYSYDDMILMGEDAGKELLSRAGPGFFDS 335
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00167 335 CDD PBP2-PBGD-1 63 306 - -
Cati3g00167 335 Gene3D - 185 242 - -
Cati3g00167 335 SUPERFAMILY Periplasmic binding protein-like II 63 261 - -
Cati3g00167 335 SUPERFAMILY Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 263 334 IPR036803 GO:0004418(InterPro)|GO:0033014(InterPro)
Cati3g00167 335 FunFam Porphobilinogen deaminase 64 169 - -
Cati3g00167 335 PANTHER PORPHOBILINOGEN DEAMINASE 60 187 IPR000860 GO:0004418(InterPro)|GO:0004418(PANTHER)|GO:0005737(PANTHER)|GO:0006783(PANTHER)|GO:0033014(InterPro)
Cati3g00167 335 Pfam Porphobilinogen deaminase, dipyromethane cofactor binding domain 64 256 IPR022417 GO:0004418(InterPro)|GO:0033014(InterPro)
Cati3g00167 335 Gene3D - 264 304 IPR036803 GO:0004418(InterPro)|GO:0033014(InterPro)
Cati3g00167 335 Pfam Porphobilinogen deaminase, C-terminal domain 269 296 IPR022418 GO:0004418(InterPro)|GO:0033014(InterPro)
Cati3g00167 335 PRINTS Porphobilinogen deaminase signature 138 157 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Cati3g00167 335 PRINTS Porphobilinogen deaminase signature 273 290 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Cati3g00167 335 PRINTS Porphobilinogen deaminase signature 107 127 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Cati3g00167 335 ProSitePatterns Porphobilinogen deaminase cofactor-binding site. 274 290 IPR022419 GO:0004418(InterPro)|GO:0018160(InterPro)|GO:0033014(InterPro)
Cati3g00167 335 Gene3D - 50 175 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00167 K01749 hydroxymethylbilane synthase [EC:2.5.1.61]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:1252214 Cati3g00167 Cati-Chr3:1252214 tandem