AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00181 CAGCATGGTAATCACTGGTTGATGATTATAGGTTTTGGCTGATTAAATTCAGGGGGGAGCTGCCATCTTCAGCATTCAGCATTCAGAAGTAGAATTGAAGAAATGGCAGCCACAATGATGTCCTCAGTAAGCCTAAAGCCTTCTCCATTCAGCATTCAGAAGCCAGCAGCCAAAGGCCTTCCTTCACTTGCAAGAACCTCCTTCAAGATTCAAGCCAGTGGTATCAAGAAGATCAAGACTGACAAGCCTTATGGAATTGGAGGAGGAATGCAATTGAGAGACGGTAAAGATGCCAACGGAAGAAAGCCAACGGGAAAGGGAGTCTACCAATTTGTTGACAAGTACGGTGCTAACGTCGATGGATACAGTCCCATCTACAACGAAGAGGAATGGTCTCCAAGTGGTGATGTCTACGTTGGTGGCACAACTGGGTTGTTGATATGGGCTGTTACTTTGGCTGGAATTCTTGGAGGGGGTGCTCTTCTGGTTTACAGCACAAGTGCTTTGGCACAGTAAAAATCTCCACAAGTTGTTCATTTGGCAAACTTGTAGTTACTATTTGTTATATTTTGTTCCATTTAATGGAACTATTTATGCAAACATGTACAATATAACACCAAATCTTGTTCTTGTTTGCTATGCTTCTGAAACCAAATTATAGTCTTCTTCTAGTAATTTCATTCTTCTTATTCTTTCTTGTAGCTAGAAATCTTGGGGGGTAAAAACATAAAATGGCACCCAATTGGGTGGTTTTTACAGAGGGGTGAACATAGTACAATACCATGTTACTCCTGCTATATTGTGTACC 808 41.46 MAATMMSSVSLKPSPFSIQKPAAKGLPSLARTSFKIQASGIKKIKTDKPYGIGGGMQLRDGKDANGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWSPSGDVYVGGTTGLLIWAVTLAGILGGGALLVYSTSALAQ 137
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00181 137 PANTHER PHOTOSYSTEM II 10 KDA POLYPEPTIDE, CHLOROPLASTIC 1 137 IPR006814 GO:0009523(InterPro)|GO:0009654(InterPro)|GO:0015979(InterPro)|GO:0042651(InterPro)
Cati3g00181 137 Pfam Photosystem II 10 kDa polypeptide PsbR 39 136 IPR006814 GO:0009523(InterPro)|GO:0009654(InterPro)|GO:0015979(InterPro)|GO:0042651(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00181 K03541 photosystem II 10kDa protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:1400055 Cati9g01677 Cati-Chr9:17725927 wgd