AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00195 CCAGAAAATCTCCATTTTTTCCGTCACTTTGGTTTCCGTCCTTCTAGAGATTTCTTCTCCTCCGCCGCCGGCACCGGCGAAACCTCATCCCTGAGTTCACCGGACCGGCAATCCTCCACTTCTGCATACAAATTCGAAAAGGTAAAACACTAAACACTTCTATTCGCTTTTTGTAGCCGGAAAATCGGTTATCGTTTTCCCTAAAAAAAAGTTATAGCGTATCAAGGAATCGATTAAATTCGCGAGATCCGAAAACCGAGGGATCAAATCCAGAGGTGTTTGGTGAAAGTTGAAACAGCAATGGCCGGAAATTTTGGATTGTGTGTGTAAATTAAGGTGTAAAAAAACATGTCTGGAGGCGATGAGAATGATCACGCTGTACAGTTGCGATCGAGTTCTTTTTCGTCTTCAGGCGACGATTTGGAAGGTAGAGTATCGTCTGTAAGGAGTAGTAGTAAGAGTATCAAGGATCTGTGGAGGAAGTTAGATCGAAGGTTTTCTGGTCGACGGCTTAGTGTGAAGCGCCGGTTGCCTAGGGAGAACCGGTCGGATTTTGGTTATGCGACGGTTGGCGGAGGCGGAGGCGGAGGCGGTGGTGGTGATGAGGCGCTTGGAGATGGTGCTCCTCCGGAATGGGCCATGCTGCTTATCGGATGTCTGCTTGGATTGGCTACCGGTCTCTGTGTTGCTGCCTTTAATCGTGGGGTGCATGTAATACATGAATGGTCTTGGGCTGGTACCCCTAATGAAGGTGCTGCTTGGCTGCGTTTACAGAGGCTAGGTGACACTTGGCATAGGATACTTCTAATACCCGTCACTGGAGGAGTCATCGTTGGGGTGTTGCATGGTTTAGTTGAAATATTACACCAGATAAAACAGTCCAATCCCGGACATGACTTTAACCTGCTTTCGGGAGTCTTTCCATCCGTAAAGGCTATACAAGCTGCTGTAACCTTAGGTACTGGCTGTTCTTTGGGTCCTGAAGGACCTAGTGTAGATATTGGGAAATCATGTGCCAATGGTTTCTCGTTAATGACGGAAAATAACAAGGAACGCAGGATAGCTCTTGTTGCGGCTGGTGCAGCTGCTGGCATATCTTCAGGTTTCAATGCAGCAGTAGCTGGATGTTTCTTTGCTATCGAGACTGTGTTAAGGCCTCAATGTGCTGAAAACTCTCCCCCTTTCACAACTGCGATGATAATTTTGGCATCGGTTATCTCGTCAACTGTGTCAAGTGTTATACTTGGAGAAAAGCAGGCTTTCACAGTGCCGACGTATGATTTGAAATCTGCTGCTGAACTACCTCTCTACTTGATCCTGGGAATGCTTTGTGGTGTCGTTAGTGTGCTATTTACTCGCTTGGTAGCTTGGTTCAACAAAGCATTTGCATATATTGAGGAAACGTTTGGACTTCCCGCTATCGTTTCTCCGGCATTAGGTGGTCTAGGAGCAGGGTTGATCGCTCTAAAATATCCTGGAATTTTGTACTGGGGATTCACTAATATCGATGAAATTTTACATACTGGGAAGACGGCTTCGGCACCTGGAATCTGGCTATTAGCGCAGTTAGCTGCCGCTAAAGTTGTGGCTACGGCTCTTTGCAAAGGTTCAGGGCTTGTTGGTGGTTTGTATGCACCAAGTTTGATGATAGGTGCTGCAGTAGGTGCCGTTGGAATGGCTGCTACTTTGGCTTCTGTTTGTTCTGTACCCTTGACTTCGGTTCTGCTTCTGTTTGAGCTCACAAAGGATTATAGAATCTTGCTTCCTCTCATGGGAGCCGTTGGATTGGCAATATGGGTTCCATCTGTAGCGAACCAATCTAAGGATTCTGAGGGATCCGAAACAAGAAGTTCATCAAGAGGCTATTCCGTTCTTTCACCAACTGATGACAAAACCGACGATTGGAGACAAAATGGCGAAGACGATTTGGAACTTTGCATAATGGGACCCGGTGATAGCCATGAAGCAATTGATGAGGATATTATTCTCGAGGATTTGAAGGTTTCTCAGGCTATGTCAAACATTTATCCGAAAGTCCTATTATCATCAACCGTTAACGAGGCTGTAAAATGCATGAATGATAGCCAACAAAGTTGTGTGGTTGTCGTTGATCACGAAGATCACTTAGAAGGGATTATGACACATGGTGACGTTAAAAGGGGCATTTTTAAGACCCCCAATGGATCCTCCGACAGTGGTCCATCAACTTCAGATTTAAGTGCGTATTTGGTGTCTTCTATTTGCACCCGAGGGATGAACTATCGTGGAAGAAAGCGTGGACTTCTAACTTGTTATCCCGATACAGATTTGGCAATTGCTAAAAAACTAATGGAGGCCAAAGAAATTAAGCAATTGCCTGTGGTACAGCACGTTGTCGATTATCAAGAAGAACGAAAGCGCAGAGTTGTTGCCATTCTCTACTACCATTCGGTCTGGAGCTGTCTCAGGGAGGAACTAAATCGCAGGGGCACACGGAGGATCGAAGACCATATCGAAGAGAAGTTTTCCAATGGGTAGTGAACTAGTGATTGAAGCCATTTGATCTTTAAAATGACAAAAGGGTGTGGTTTTTTGGAGACCCTTTCGGTTTTGAAGGTTTAGATGGAGTTCAAACGCGGGTGGTGTTACTTTTCTTATACTGATAATCCGAGCGCAATCATTCTTCCCCTTTGCCAACTGAGCTATACGTTTGAAGGCTTTTGTTATACTTATAATTACTCACATTTTTCTGACCATAGAATTAGGAAACACATTTGCTTGTTTTATGTATTTCAACTTAACTTAGAAGAAGGGTGTTAGTTTCTTAAGCAATAACAAAATCTTGTATTTATGTGCAGAAAGAAAAAGAGAATATATGATTAAATTCGATAAGTAACGATAAAGGTTTAACGATTTGGCAAATGTATGTGTTTCGGATTTGGTAGAAGAACCGTTTGTGTATCGTGTTGAAATAGAAGTTGAGTTAACAGTGAGAATTGGATCTAAACTGTTGATCACTTGTAATCTCATGTCTTTTCATGAAT 3023 43.8 MSGGDENDHAVQLRSSSFSSSGDDLEGRVSSVRSSSKSIKDLWRKLDRRFSGRRLSVKRRLPRENRSDFGYATVGGGGGGGGGGDEALGDGAPPEWAMLLIGCLLGLATGLCVAAFNRGVHVIHEWSWAGTPNEGAAWLRLQRLGDTWHRILLIPVTGGVIVGVLHGLVEILHQIKQSNPGHDFNLLSGVFPSVKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMTENNKERRIALVAAGAAAGISSGFNAAVAGCFFAIETVLRPQCAENSPPFTTAMIILASVISSTVSSVILGEKQAFTVPTYDLKSAAELPLYLILGMLCGVVSVLFTRLVAWFNKAFAYIEETFGLPAIVSPALGGLGAGLIALKYPGILYWGFTNIDEILHTGKTASAPGIWLLAQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVANQSKDSEGSETRSSSRGYSVLSPTDDKTDDWRQNGEDDLELCIMGPGDSHEAIDEDIILEDLKVSQAMSNIYPKVLLSSTVNEAVKCMNDSQQSCVVVVDHEDHLEGIMTHGDVKRGIFKTPNGSSDSGPSTSDLSAYLVSSICTRGMNYRGRKRGLLTCYPDTDLAIAKKLMEAKEIKQLPVVQHVVDYQEERKRRVVAILYYHSVWSCLREELNRRGTRRIEDHIEEKFSNG 722
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00195 722 Gene3D Clc chloride channel 89 498 - -
Cati3g00195 722 SUPERFAMILY Clc chloride channel 95 487 IPR014743 -
Cati3g00195 722 MobiDBLite consensus disorder prediction 9 37 - -
Cati3g00195 722 MobiDBLite consensus disorder prediction 491 521 - -
Cati3g00195 722 MobiDBLite consensus disorder prediction 1 39 - -
Cati3g00195 722 Gene3D - 536 699 IPR046342 -
Cati3g00195 722 MobiDBLite consensus disorder prediction 68 88 - -
Cati3g00195 722 CDD Voltage-gated-ClC 106 481 - -
Cati3g00195 722 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 84 441 IPR050368 GO:0005794(PANTHER)|GO:0009507(PANTHER)
Cati3g00195 722 Pfam CBS domain 552 606 IPR000644 -
Cati3g00195 722 MobiDBLite consensus disorder prediction 491 510 - -
Cati3g00195 722 ProSiteProfiles CBS domain profile. 556 614 IPR000644 -
Cati3g00195 722 Pfam Voltage gated chloride channel 440 484 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cati3g00195 722 Pfam Voltage gated chloride channel 172 440 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cati3g00195 722 PRINTS Chloride channel signature 246 265 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cati3g00195 722 PRINTS Chloride channel signature 436 452 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cati3g00195 722 PRINTS Chloride channel signature 195 214 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cati3g00195 722 PRINTS Chloride channel signature 454 473 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cati3g00195 722 SMART cbs-1 559 607 IPR000644 -
Cati3g00195 722 SMART cbs-1 644 700 IPR000644 -
Cati3g00195 722 SUPERFAMILY CBS-domain pair 547 673 IPR046342 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00195 K03281 chloride channel protein, CIC family
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Event-related genes

Select Gene_1 Gene_2 Event_name
35475 Cati3g00195 Cati7g03552
35476 Cati3g00195 Cati7g03555
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:1533691 Cati9g01672 Cati-Chr9:17675181 dispersed
Cati Cati-Chr3:1533691 Cati3g00195 Cati-Chr3:1533691 tandem