AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00227 ATTTTTGTACTTTTAGTGATTAAGAAAACATAGAGCCATCTTCATCATGGGATCTGGTCTCCCAAAAGTCAAAATCACGGTCAACGCCCCCAATCTCACACACTGAAGAAGAAGAAGAAGAAGAAGAAGAACAACCAGATCGCAATCAAATTCTCAATTTTGCTTCCATGGCTTCCACTGGAAATCAAAATCAAAATCAACAACAAGGTGGTGGTGGTGGTGTTAATGGAGCTCCATTCGATCTTCAAACCCTATTCAACAACAACAATCCCCAAAACCCTAACCACCACCACCACCACCCTTACCCTCCGCCGCCGTCCTCCGCCGCTTCCTACCCTCCTCCCACCGTCTCCGCCGCCGGCGGACCTTACCCTATCTTCCACCACCAGTTCCACCTCCCGCCGCCACCACCTCAATTGCACTCCAATCGATCCCTTCCTTATCCCACCTCCCCTCTTCAACCTCCAAACCCTAACCCTAACCCTAACCATGGAGCTCGATTAATGGCGCTCTTGAGCTCCACTCCCGATACGCCGTCTTCCCAGTCGTCTGTTCCTTCACCGACGGAAGCTACTCAAAACCCTAACCCTAACCCTAACCCTAGCGCTATGGTGGCGGTGAATTCCGGCGGAGGTCCGGCGAGGATGGCGAGCAGTAAGGTTCCGAGAGGACGGCATTTGGTTGGTGATCGGGTGGTTTACGATATAGACGTTAGGTTGGCTGGAGAGACGCAGCCGCAGCTCGAGGTGACTCCGATCACGAAATACGGGTCGGATCCTGGACTGGTGGTGGGTCGACAGATTGCGGTTAATAAGACGTATATATGTTACGGGTTGAAACCGGGGACGATTAGGGTGCTTAATATAAACACTGCGTTACGGTCGCTGCTTAAAGGTCTTGCTCAGAGGGTTACAGACATGGCTTTCTTTGCAGAGGATGTTCACGTTTTAGCGAGTGCAAGCGTGGATGGACGAGTTTACGTGTGGAAGATTACTGAAGGTCCCGATGAAGAGGATAAGCCACAAATCACCGGAAAGATAGTTATTGCTGTACAAATTGTAGGAGAAGGAGAACCTGTTCATCCTCGAGAAGTGCTTGTAGTTGGAATCGGAAAGCGTATTCTTAGACTTGATACTACAAAAGTTGGTAGAGGGGAAGCATACTCTGCAGAGGAACCTCTCAGATGCTCTGTTGATAAGTTGATTGACGGAATTCAGTTCGTTGGTAAGCATGATGGTGAAGTCACGGATCTATCAATGTGCCAATGGATGACCACTCGCTTGGTTTCTGCTTCTGTAGATGGAACGATAAAGATCTGGGAAGATCGCAAGTCATCTCCAATTGCAGTACTGAGGCCATACGATGGTCTTCCAGTCAACTCTGTTACGTTCTTGACTGCTCCACACCGGCCAGATCACATCATACTTATAACTGGGGGTCCATTGAATCGCGAAGTGAAAATTTGGGCCTCGGAAAGCGAAGAAGGATGGTTGCTTCCCAGCGATGCCGATTCATGGCACTGTACTCAAACATTGGAATTGAAGAGCTCTGCTGAACCTAGAATCGAAGATGCATTCTTCAATCAAGTCGTTGCATTATCCCAATCCGGTCTTCTCTTACTAGCAAACGCCAAGAAAAACGCTATTTATGCCGTACACTTGGATTACGGCTCCAACCCTGAATCGACCCATATGGATTACATTTCTGAGTTCACCGTCACTATGCCGATACTGAGCTTTACCGGCACTAGCGATGTTTTACCAAACGGAGAGCACATCGTGCAGGTTTACTGTGTCCAAACACAAGCCATTCAGCAATACGCATTGGACTTATCCCAGTGCCTACCCCCTCCGATTTATGATGTCGTCCATGAGAGATCGGAAGGTTTTAGCGGGTCGGAAACTTCTGGAGTCAAATTGGACGAGATCGGGTCAAGACCCGCCTCGGATGGTGCACCGATCTTGACCGAAGTTGCCGTCTCGAAGGAGATTTTTCCGCCGAGTGCCGAAATGAAATCCATCCTGTCTCCGATTGCTAACGATAACGATATCTTTCCGACGAGCCCCAAGTTGTCGGGAAAAGTTTCGGATTTTAGAAGTCCGGCTAGCGGTTTCGAGCCTCGTGATCAGATAAACGGGTATGGTGATCAGAAAGTTACGGAATTGGAACGGGCTCGTTCGAACTTGTCTAGTGTGGCCTCGGTGGATGACGATGTAATAAGGACCGATGAAAATAGAAGTGATCGAATGGTCAAGTTTAAACACCCGACTCATCTCGTAACTCCTGCCGAATTGATGGCCACGTCATCTGCGGAAGTAAGTCATGTTATTGATGACGAAGCGGTAATCTCCGATGACGTGGAGGTTAAGGTTGTTGGTGAAATGGGAATTAGTCAAAATGACGATGCTGCCCGTCAAGTTGAGTTGGATGGTTCGGGTTATGAAGTGAAGGAAAAATCTTTCTCGTCACAAGCAACGGGTCTCGGGCTCGATATGGCATGGGATAACCGTGCCGTAACTGTGGAAAGTTATGTGGTTAACGAGGTGAAAGAAGTTGATGGGATTGTGGAAAGGAAGGTGGTGGATGAAGCTTCTGATGGTCGGGATGGCGATCGAGATATGGTGGCTAATGTATCGGGAGTGGTCGAGCCGACCGTGCCGGGAACGGTACAGTCGGTGGGTCCCACATCGAGAGGCAAAAAACAGAAGGGAAAGAATGGTCAAACGTCAAGTGTCGTCAAGTCAACGGATTCTTGTGATGAAGCAGGAGCGAGTTTGAGTATTCCCTCGGCTGAAGCCATACTTTTGCAGATTCAGTCCATGCAAGAAACAATTAATCAGGTTTTGATCAGTCAAAAGGAAATCCAGAAGCAGATTCCGGTGGTGGCTGCGGTACCAATTACAAAAGAAGGGAAAAGAATCGAGGCGGTAATCGGGAAAAGCATGGAGAAAATACATAAAGCTAATTCCGATGCTTATTGGGCTCGTACCCAAGAAGAGTTTGCGAAGCAGGAAAAGTCAAACCGAGACCGCCTTCAGCAAACTGTGACTTTGGCCTCAAATGGCCACAAAGATTTGGTGGCTGCATCCGAGAAATTGCTGAAGAAGGAAATGGCTGCAGCTGTGGCGGGTGTTGGGCGCTCGGTTGCTCCAGTTATCGAGAAGGCGGTCTCCACGGCCGTTTTGGACTCTTTCCAGAGAGGCATAGGTGATAAGGCTGTAAGTCAATTGGAGAAAGCGGTGAATTCTAAACTCGAAGCTACCGTTTCTAGGCAAATTCAAGCTCAATTTCAAACTTCTGGTCGACAAGCTTTACAGGAAGCATTGAAATCGAGTATGGAGGCTTCCATTATTCCCGCCTTTGAGGCGTCGTGTAGAACCATGTTTGATCAAGTTGATGCTACATTTCAAAAGGGAACGGTTGACCACACAACTGCGGCTCAGCAACAAGCTGAATCCGTGCATTTGCCGTTAGCGTTTGCTTTGAGGGACACCATCAATTCAGCATCATCTCTGACTCGAACACTTAGCAATGATTTGGGTGACGGTCAAAGGAAATTGATGGCTCTTGCAGTTGCCGGAGCAAGTTCTAATACTGGAAATCCGTTGATAAGACAAATAAGCAACGGTCCTTTAGGCAGTTTCAATGAGACGATTGAAGCACCGGTGGATCCAACAAAAGAGCTATCTAGATTGGTATACGAGCACAAATACGAGGAGGCTTTTACGGCCGCCCTGCAAAGAAGCGATGTTCGGATCGTATCTTGGTTATGCTCTCAAGTTGATTTACAGGGGATATTAACAAGAAATCCAGTTCCTTTGAGTCAAGGTGTACTGCTATCTTTGCTGCAGCAATTGGCATGCGATATCGGGAACGATACCTCGAGAAAACTCGGTTGGATGATGGATGTGGTGGTCGCCATAAAACCGACGGACGGGATCATCGCGATGCACGTGAGGCCGATATTTGAACAAGTGCAGTCGATCCTAAACCATCAGCATCTGGGTCAGCGACATCGGTTTAGAGGCGGTAAGCGGGTAGTAAAGTAG 4049 48.23 MASTGNQNQNQQQGGGGGVNGAPFDLQTLFNNNNPQNPNHHHHHPYPPPPSSAASYPPPTVSAAGGPYPIFHHQFHLPPPPPQLHSNRSLPYPTSPLQPPNPNPNPNHGARLMALLSSTPDTPSSQSSVPSPTEATQNPNPNPNPSAMVAVNSGGGPARMASSKVPRGRHLVGDRVVYDIDVRLAGETQPQLEVTPITKYGSDPGLVVGRQIAVNKTYICYGLKPGTIRVLNINTALRSLLKGLAQRVTDMAFFAEDVHVLASASVDGRVYVWKITEGPDEEDKPQITGKIVIAVQIVGEGEPVHPREVLVVGIGKRILRLDTTKVGRGEAYSAEEPLRCSVDKLIDGIQFVGKHDGEVTDLSMCQWMTTRLVSASVDGTIKIWEDRKSSPIAVLRPYDGLPVNSVTFLTAPHRPDHIILITGGPLNREVKIWASESEEGWLLPSDADSWHCTQTLELKSSAEPRIEDAFFNQVVALSQSGLLLLANAKKNAIYAVHLDYGSNPESTHMDYISEFTVTMPILSFTGTSDVLPNGEHIVQVYCVQTQAIQQYALDLSQCLPPPIYDVVHERSEGFSGSETSGVKLDEIGSRPASDGAPILTEVAVSKEIFPPSAEMKSILSPIANDNDIFPTSPKLSGKVSDFRSPASGFEPRDQINGYGDQKVTELERARSNLSSVASVDDDVIRTDENRSDRMVKFKHPTHLVTPAELMATSSAEVSHVIDDEAVISDDVEVKVVGEMGISQNDDAARQVELDGSGYEVKEKSFSSQATGLGLDMAWDNRAVTVESYVVNEVKEVDGIVERKVVDEASDGRDGDRDMVANVSGVVEPTVPGTVQSVGPTSRGKKQKGKNGQTSSVVKSTDSCDEAGASLSIPSAEAILLQIQSMQETINQVLISQKEIQKQIPVVAAVPITKEGKRIEAVIGKSMEKIHKANSDAYWARTQEEFAKQEKSNRDRLQQTVTLASNGHKDLVAASEKLLKKEMAAAVAGVGRSVAPVIEKAVSTAVLDSFQRGIGDKAVSQLEKAVNSKLEATVSRQIQAQFQTSGRQALQEALKSSMEASIIPAFEASCRTMFDQVDATFQKGTVDHTTAAQQQAESVHLPLAFALRDTINSASSLTRTLSNDLGDGQRKLMALAVAGASSNTGNPLIRQISNGPLGSFNETIEAPVDPTKELSRLVYEHKYEEAFTAALQRSDVRIVSWLCSQVDLQGILTRNPVPLSQGVLLSLLQQLACDIGNDTSRKLGWMMDVVVAIKPTDGIIAMHVRPIFEQVQSILNHQHLGQRHRFRGGKRVVK 1293
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00227 1293 Gene3D - 1218 1289 IPR044938 -
Cati3g00227 1293 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 40 1278 IPR045152 GO:0000932(PANTHER)|GO:0031087(InterPro)|GO:0031087(PANTHER)
Cati3g00227 1293 MobiDBLite consensus disorder prediction 41 56 - -
Cati3g00227 1293 MobiDBLite consensus disorder prediction 117 149 - -
Cati3g00227 1293 MobiDBLite consensus disorder prediction 829 861 - -
Cati3g00227 1293 MobiDBLite consensus disorder prediction 1 167 - -
Cati3g00227 1293 FunFam Enhancer of mRNA-decapping protein 4 1218 1289 - -
Cati3g00227 1293 MobiDBLite consensus disorder prediction 73 106 - -
Cati3g00227 1293 MobiDBLite consensus disorder prediction 25 40 - -
Cati3g00227 1293 Pfam Enhancer of mRNA-decapping protein 4, C-terminal 1175 1276 IPR049404 -
Cati3g00227 1293 ProSiteProfiles Trp-Asp (WD) repeats profile. 352 394 IPR001680 GO:0005515(InterPro)
Cati3g00227 1293 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 283 IPR001680 GO:0005515(InterPro)
Cati3g00227 1293 MobiDBLite consensus disorder prediction 634 659 - -
Cati3g00227 1293 SUPERFAMILY WD40 repeat-like 211 500 IPR036322 GO:0005515(InterPro)
Cati3g00227 1293 FunFam enhancer of mRNA-decapping protein 4 193 499 - -
Cati3g00227 1293 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 194 280 IPR032401 -
Cati3g00227 1293 Gene3D - 340 557 IPR015943 GO:0005515(InterPro)
Cati3g00227 1293 MobiDBLite consensus disorder prediction 1 17 - -
Cati3g00227 1293 Pfam WD domain, G-beta repeat 355 384 IPR001680 GO:0005515(InterPro)
Cati3g00227 1293 Gene3D - 190 291 IPR015943 GO:0005515(InterPro)
Cati3g00227 1293 SMART WD40-4 346 385 IPR001680 GO:0005515(InterPro)
Cati3g00227 1293 SMART WD40-4 234 274 IPR001680 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00227 K12616 enhancer of mRNA-decapping protein 4
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Event-related genes

Select Gene_1 Gene_2 Event_name
35482 Cati3g00227 Cati7g03551
35483 Cati3g00227 Cati9g02136
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:1786059 Cati7g03551 Cati-Chr7:72607909 wgd
Cati Cati-Chr3:1786059 Cati9g02136 Cati-Chr9:23707255 wgd