Gene detail

Gene Search

Species

Gene ID

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Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cati3g00228	ATTCAAGATTTCTTGAATTCAACAAAATAAAGGAACCCATATTCCAAACTTTGATTTTAGAGTAACACACAGTGAGTGGTGAAGTGTGTGTGTTTTTTTATATGAAGAGTCGCCGGCGGGAGAGAATTCCGTCAAGACAACAACCTGGGAAAGCACGGCGAGTTGTTGTTGGACGGGATTTTCGACTGCTTCCATGAAATCACAGCGGCACTGGCTTTAGGTAATATGAACGACTCTGCTTACCGGGTGGATACGACCTCACGCCTTGCCCAATGGCGAATCGACAGCTTGGCGGCCTTTACGTATCGGAAGTCTAATCCTTTTAGGATAGGGAAATGGAATTGGCATTTAACTGTGGAGAAGAATCGGACCTTGTTGATTAAATTATACCCGGAGATATCGAACTTAACTCGAGACGACCCGCCAATTGTTTCTTTCATCATTCGGCTCGTCTCTTCGGTCGGAGGTCGCAAGGTGTTGGTCCATCCTGAAATTAGGGATAAACAACTAAAAAGCAGCGATGATTTTGTTTGGGTACTCGAGGTTCCATTAACAGGGAAGTTCATCATTGACGGCGGTGAATCATGCTCTATGTGGGCGGAAGGGGAGGCGCAAAAGAAATCGTATGCAACCGCTCTCACCTCCCTCGGCCGAATGTTATCAGAAAGCATTCACACTGATATCATCATCAATGCTTCCGATGGAAGCATTGGGGCCCACCGTGCAGTCCTTGCTGCACGGTCGCCAGTTTTCCATAGCATGTTCTCCCATGACTTGAAAGAAAAAGAGTTGTCCACCATTAACATTCTCGATATGTCCATTGAAGTTTGCCAAGCTTTTCTCAGCTCGTTATACGGTAACATAGCAAACGAAGATTTTCTCACTTACAGGCTCGATCTTCTTAGAGCAGCTGATAAATACGAAGTGTTGGACCTAAAAGAGGCGTGCCACGATAGTCTTTTGGAAGATATCAACACAAAGAACGTGTTGGTGAGGCTCCAAAACGCTAAGTTATACCGTCTGCAAAGACTGAAGGTTTGTTGCATGCATTATCTCGTGAAGTTCGGTAAGATATACGAGATCCAAGAGGAATTCGGTACATTTATACAGTCAGCAGATAGAGAACTTATCTGGGAAGTCTTTAACGAAGTTCTTTCCATATGGAAAGGTTTCTGAGTCGTTAATTTTGCTATATTTAATGGTTCGCAAATTCTAGGGTACCACGAGAACCGACGCAAGTTGTTTGTGTGCATAAACATAATCATTCTATATTTTACCATTATAATCTAATAAGATATACACATATCTTGATTTCGATAAGGTAT	1325	42.94	MNDSAYRVDTTSRLAQWRIDSLAAFTYRKSNPFRIGKWNWHLTVEKNRTLLIKLYPEISNLTRDDPPIVSFIIRLVSSVGGRKVLVHPEIRDKQLKSSDDFVWVLEVPLTGKFIIDGGESCSMWAEGEAQKKSYATALTSLGRMLSESIHTDIIINASDGSIGAHRAVLAARSPVFHSMFSHDLKEKELSTINILDMSIEVCQAFLSSLYGNIANEDFLTYRLDLLRAADKYEVLDLKEACHDSLLEDINTKNVLVRLQNAKLYRLQRLKVCCMHYLVKFGKIYEIQEEFGTFIQSADRELIWEVFNEVLSIWKGF	316

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cati3g00228	316	SUPERFAMILY	POZ domain	136	247	IPR011333	-
	Cati3g00228	316	CDD	BTB-POZ-ZBTB-KLHL-like	150	232	-	-
	Cati3g00228	316	ProSiteProfiles	BTB domain profile.	151	210	IPR000210	GO:0005515(InterPro)
	Cati3g00228	316	Gene3D	Potassium Channel Kv1.1; Chain A	124	279	IPR011333	-
	Cati3g00228	316	Pfam	BTB-POZ domain	144	247	IPR000210	GO:0005515(InterPro)
	Cati3g00228	316	PANTHER	OS08G0495500 PROTEIN-RELATED	4	315	IPR044714	-
	Cati3g00228	316	SMART	BTB-4	151	249	IPR000210	GO:0005515(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cati3g00228	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	35484	Cati3g00228	Cati7g03550
	35485	Cati3g00228	Cati9g02132

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Cati	Cati-Chr3:1804199	Cati9g03093	Cati-Chr9:60993930	dispersed
	Cati	Cati-Chr3:1804199	Cati7g03550	Cati-Chr7:72592593	wgd
	Cati	Cati-Chr3:1804199	Cati9g02132	Cati-Chr9:23672412	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	Cati	BTB	1e-20	CL0033		TR	TRAF