AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00243 ATATCATAATGGAAACAAGATGACTCCATTAGTAGTGTTGAAATCATAATCAGTTGAAGCCACTCGCTGATGGAAGAATCGCCGGAGATTTTGTTGAACTCGATGGCGAACGCCGGAGTTCCGATCCCGCTGGAGGTCTCGTCGGTCGAGGATCTAACGCCGGAAACCTTAGTTTCGATCTGTGCTCATTCTCTTCGAAGAATTTCGAACTCGGACTCCTTTCCGATCACTTTACCGGAATCTATGGCGGATCGCTTCAAAGTCTGCACCGATCTAGCTTCCTCCGTCAAAGACCTAGGTTACATCGGCGAGATGAGCTTCCATAAGTTCCTGTATCCATCTGAAGAAGACATGTATAAGTTGATAAGATTTTTGGTTGGGAGGCTCTCTGAATCATCTCCAACTGCAGTATCACCAAGCACGAAGGTCAACAACGGCAATGCAATGATAAATACAGAGAATCGTGTAAGTTCTTCCATTGCTGCGGATGATGAGGGGCTAGATTTGCATACAAAAGTTGAAGGTCTTTTACTGAGAACTGAAGAAATGGTTTCGGATTCACTCCAATATGCTGAAAAAAATATTGCAGCTGATGATGTTAATAGACTTGGGAATTCAAAAACCGATAACGTTGGATTCATTGTTATGGAAAACGGCAGAAGTTTAACAGAGGAAATCGAGTATTCAAGAAAGTCTGCAGACGGTGAGGGAGGAGTTATATCTCAGGAAGACAGTCGACGTAGAATTGAGCAGGCACAAATGTCGCTTCATGAGAATTCATCTCAGGCAAGTATACCGTTGCATACGAGCGACAAGACAGAAATGTTGCCGATTCAAGAAAATGTGATTTCGGATGAAGTGACGGCAAAATCATTAGAGTTGCAGCAATTGGAAGAGCAGCATGATCTGTTGAAATCAGCAGTGGAAATGGCTTGCAATGAACAAAACCCTGTGGATTCATACATTGCACAGCTCAGCAAGCAAATAGATGCAAGGAGGCAAAATCTTGCAGAACTGGATTCAAAATGGAAAGCCATCATAAAGCCATTAGAAGAGAAGAAAAGAAATCTTGAAGAAGCTCTATATGCAACACAACCAGTCTCTCAAGAAAAACATCAAAAGTGGAAAAAACTCGAGCAGGACATGGAGTCCGTATTGTCTGAAACAGAACAGAGGTGGTGGTTATGGGCGGCGGTGGTTCTAGATGGTGGTTCTGGGTGGCGGTGGTTGTGGGTGGTGGTTTTGGGCGGCGACGGTGGTGGTTTCGGGTGGTGGTTATGGGCGGTGGTGGTTATGGGTGGTGGTTTTGGACGGCAACGGTGGTGGTTCTGGGCGGCGGTGGTTCTGGAGGGTGGCGATGGTTGCCAGTGGAGAGACGGTTGCCGGGTGATCTCCGGCGATGGTTTTGGGTCTCCGGCGGTGGTTTACTGGTTCAACCGGGAGGAAGAACTTTCCAAGCTGTCAACAGAAATTGAGAAACTACCAAAATTGGCGACAAGAAGATCCTACATTGAACGAATAAAAGAGATAACAAAAAACAGCCGGAAACAGGATATTGATATAGAACGTATCTTGAAAGAGACCCGAGAGCTTCAGTTGGAGAGTAACATGATTCAAGAACGCCTGCATCGAACTTACGCTGTGGTAGATGAAACGTTGCTGAGCCATATATTCTCACACGGCATTAGAGTCAAGGTCTACCACTCTATCTGTACCTGTCCAGCCCCCTCTCGCGACAATTTGTGTCCATCTAGCATTTATTGGAGTGGGGAATCAAAGAAGAACCACGTCGGGGAGCAAGCTCACAATCTATTGACCACCATCCACGAAAGCTTCGAAGAGATATCGGAAACAATCCTCGCCACTGATCGAACTCGTAGAGAAGTTACCGAGCTTGAAACTAAGCTTTCCCGCATCGGTGCCCAGAGTTTAAACGTTGGGAAACTAGAAGCCGATCTCGATGCCATCAGGAAGGAAAACGAATACCTTCAGTCTCACTTGGGTACGTCTCTAAACCTCTAACTCACAACGGCCTCATCTGGTTTAGGATTCCGATAGAATCTGATGGAATTGGAATATGATCAATTCCGTTGACCAAATACCATCCAGGAATGATAGGTGTTTTCTTACATGTAAACTATTCATAAATGTACAATCATCATACATGATATTTTAGTTTTAAATGTTTCGGTTATAATTTACTTATAGAATTTATTAGGGGTAGAAATTTTGTAACTATTTCCTATCCAAGACCTGGGATCACGTGAGACCAA 2273 44.52 MEESPEILLNSMANAGVPIPLEVSSVEDLTPETLVSICAHSLRRISNSDSFPITLPESMADRFKVCTDLASSVKDLGYIGEMSFHKFLYPSEEDMYKLIRFLVGRLSESSPTAVSPSTKVNNGNAMINTENRVSSSIAADDEGLDLHTKVEGLLLRTEEMVSDSLQYAEKNIAADDVNRLGNSKTDNVGFIVMENGRSLTEEIEYSRKSADGEGGVISQEDSRRRIEQAQMSLHENSSQASIPLHTSDKTEMLPIQENVISDEVTAKSLELQQLEEQHDLLKSAVEMACNEQNPVDSYIAQLSKQIDARRQNLAELDSKWKAIIKPLEEKKRNLEEALYATQPVSQEKHQKWKKLEQDMESVLSETEQRWWLWAAVVLDGGSGWRWLWVVVLGGDGGGFGWWLWAVVVMGGGFGRQRWWFWAAVVLEGGDGCQWRDGCRVISGDGFGSPAVVYWFNREEELSKLSTEIEKLPKLATRRSYIERIKEITKNSRKQDIDIERILKETRELQLESNMIQERLHRTYAVVDETLLSHIFSHGIRVKVYHSICTCPAPSRDNLCPSSIYWSGESKKNHVGEQAHNLLTTIHESFEEISETILATDRTRREVTELETKLSRIGAQSLNVGKLEADLDAIRKENEYLQSHLGTSLNL 650
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00243 650 Coils Coil 299 319 - -
Cati3g00243 650 PANTHER JM1 PROTEIN 150 369 IPR008530 GO:0097602(PANTHER)|GO:2000060(PANTHER)
Cati3g00243 650 Coils Coil 264 291 - -
Cati3g00243 650 Pfam CCDC22 protein N-terminal domain 1 107 IPR048349 -
Cati3g00243 650 Pfam CCDC22 protein coiled-coil region 457 530 IPR048348 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00243 K23343 coiled-coil domain-containing protein 22
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:1933470 Cati5g01614 Cati-Chr5:19903348 dispersed