Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cati3g00246	ATGCTCAAGGACTGTGATTTGGATTCCAATGAAGCTCGCCGAAGGTTGAAGATGATCTATGACATCAGAGAGATCGCTAGAAAACACAATGTAGAAGATGTGTATGTAATGCTTAAGGACTACAATGATCCTAACAAAGCTGCTTATAGGTTGTTATACATTGAGTACGTTGATGTTCTATTGATAAGGGGTGGGCAAGACCCGATCGACCTGAATATTCGGGCTTTCGGTTTCGTTTGGCCATCACTGTTTAGGCGCATGGCCCACCCAAAAACGGATGGGCCGGACGTCGAGATATCGGTATATCCGCCAATAATAATCAAACGATCACCGCCTGAAAGATTCCATCTTAATCGTCACCGGATCTCTCTCCCAACTACTTCTGGAAGCTTCTGCGTGGTGTTGAATCCGGCGATTATCGGAGCCAAAAAAACCCTAGCCGGAGTGATGAACAACGGCGGCGAGTTCCGATACGTGATCGCTCAAAACGCTTACATCAAGCTCGTCCTCCACGCCTTGAAGCACAAAGCCTCCTCCGTCAACGGCGTCCTCCTCGGCCGTCTCTCCGGCGATGTGGTGGAAATCACCGAATCGGTTCCTCTTTTCCACTGTTCTCAGATCGGACTCCTGCCTCCTCTCGAGATCGCTTTAATTATGATCGAAGAGTATTACAGTTCACAAGGACTGAGTATCGTCGGATATTTCCACGCCAACGAGCGTTTCGATGATCTCGAGCTCGGTACCGTTGCGAAGAATATTGCCGATCACATTTATCGTTATTTTCCTCAAGCGGCGGTGCTGTTGCTAGATAACAAAAAACTTGGAGCTTTGAGAAACAAGAAGGATACAGCTCCTGTAATGCAGCTTTATACACGAGACTCCTCTAGAAGTTGGACCTTGGCCAATCGGATTACCACCAAGGAGCCATCCGCCAATATCCTCCTCTTGGATTATACTTCATCCGAGAAATGGAAAGATATTGTAGATTTCGACGACCATCTTGATGACATAAGCAAGGATTGGTTGAACTCTGAACTCTTTAACTGGAAGAGAACTGCGGGACTTTCCGCCATGCCAAAGGTTCCGCTTTGGGATCTGCCTGAACTGCCGCAGAATCAGCTTCCTTCTCATCTTCATCTCCAGAAAACTCGCGTCTTCTGCAACAACGATGCTCCAACTCATACAGAGAACATACACTATTCTGGTGCATATGCGGCATTGGGGATCGATAACAGCTTAAGGTTGGATGAATTCAGGAAAAACTTCAAAGTTAAGGTGATTAAGCTCAATGAAGATGACATGGAGTTTGATTTGATCGGGATTGATGCTTCTATTGCCAATGCTTTTAGAAGAATCCTAATATCTGAGCTGCCCACTATGGCCATTGAGAAGGTTCTTGTTGCAAATAGTTCATCAGTCGTACAAGATGAAGTACTTGCCCAACGGCTGGGTCTCGTACCAATAAAGGTCGATCCAAGGCTGTTTGAGTATATGTCAGAAAATGACGTTCCTAACGAGAAAAACTCTATTGTTTTCAAACTCCATTACAAGTGTGCTCGAGGATCTGGTGAACGACGCACAGTGTATTCTCATGATCTGAAGTGGTTGCCGTTTGGGAGTGAATACGTTCTGCCCACCGAAACTTCTTCAGATCCCACATCGAAACCAAAGACGTACACATCATTTACTTCCAGCCAAGATTCCATGCCAGAATTTTCAAATAATCCTATCACTGTCACACCTGGTATCATTATATCAAAACTTGGGCCTGGGCAGGAAATCGAACTAGAAGCACATGCCGTAAAAGGTGTTGGTAAAACACATGCCAAGTGGTCTCCTGTGGCCACTGCTTGGTATAGGATGCTCCCCGAGGTTATATTGTTGCAAGATATTGAAGACGATGAGGCTCAAAAACTTGTAAAGAAGTGCCCTGTTAATGTGTTTGACATTGAAGACATGGGTAAAGGTGGGAAGAGGGCAACCGTGGCTCGACCAAGATCTTGTACTTTGTGTAGGGAATGCATTAGAGAGCCTGGATGGGAGGAAAAGGTGGCACTACGACGTGTAAAAGATCACTTTATTTTCACTATAGAGTCTACGGGAGCATTGCCTCCCGAGGTGTTATTTACCGAAGCTGTGAAGATCTTGGAAGACAAGTGTGAACGCGTGATAACGGAGCTCTCATAGGCCAATTCTTTTTTATTCAGTTGAAATTACACTTTTATCTTTTTGGTGATTTTGATATATAAACCATCACCTTACTTGTAGCTCTCTTATCTTGCATTAATTGTATTTCATGTTCGAATTACGTTTCGCCACACTCGATCGTTTTCAGTAGGAAATATATCGTTTTATGAAATGTACTTGTAATGTACATTTTAGGCCCGTAAACCAAAGCAAACGAGCTTCGAGGCTGTTTGGATGGTTTTCTGTTAAGTCTTATATGTATAAAGTTGTGTGTATGGATTAATGTGTCTATAGATTGAA	2487	44.03	MLKDCDLDSNEARRRLKMIYDIREIARKHNVEDVYVMLKDYNDPNKAAYRLLYIEYVDVLLIRGGQDPIDLNIRAFGFVWPSLFRRMAHPKTDGPDVEISVYPPIIIKRSPPERFHLNRHRISLPTTSGSFCVVLNPAIIGAKKTLAGVMNNGGEFRYVIAQNAYIKLVLHALKHKASSVNGVLLGRLSGDVVEITESVPLFHCSQIGLLPPLEIALIMIEEYYSSQGLSIVGYFHANERFDDLELGTVAKNIADHIYRYFPQAAVLLLDNKKLGALRNKKDTAPVMQLYTRDSSRSWTLANRITTKEPSANILLLDYTSSEKWKDIVDFDDHLDDISKDWLNSELFNWKRTAGLSAMPKVPLWDLPELPQNQLPSHLHLQKTRVFCNNDAPTHTENIHYSGAYAALGIDNSLRLDEFRKNFKVKVIKLNEDDMEFDLIGIDASIANAFRRILISELPTMAIEKVLVANSSSVVQDEVLAQRLGLVPIKVDPRLFEYMSENDVPNEKNSIVFKLHYKCARGSGERRTVYSHDLKWLPFGSEYVLPTETSSDPTSKPKTYTSFTSSQDSMPEFSNNPITVTPGIIISKLGPGQEIELEAHAVKGVGKTHAKWSPVATAWYRMLPEVILLQDIEDDEAQKLVKKCPVNVFDIEDMGKGGKRATVARPRSCTLCRECIREPGWEEKVALRRVKDHFIFTIESTGALPPEVLFTEAVKILEDKCERVITELS	728

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cati3g00246	728	ProSiteProfiles	MPN domain profile.	158	289	IPR037518	-
	Cati3g00246	728	SUPERFAMILY	RBP11-like subunits of RNA polymerase	420	727	IPR036603	GO:0006351(InterPro)\|GO:0046983(InterPro)
	Cati3g00246	728	Pfam	RNA polymerase Rpb3-Rpb11 dimerisation domain	435	720	IPR011263	GO:0003899(InterPro)\|GO:0006351(InterPro)
	Cati3g00246	728	CDD	RNAP-I-II-AC40	422	726	IPR033901	GO:0001054(InterPro)\|GO:0001056(InterPro)
	Cati3g00246	728	Gene3D	-	424	719	IPR036603	GO:0006351(InterPro)\|GO:0046983(InterPro)
	Cati3g00246	728	CDD	MPN-UPF0172	160	343	IPR005366	GO:0072546(InterPro)
	Cati3g00246	728	MobiDBLite	consensus disorder prediction	546	571	-	-
	Cati3g00246	728	SUPERFAMILY	Insert subdomain of RNA polymerase alpha subunit	458	613	IPR036643	-
	Cati3g00246	728	Pfam	RNA polymerase Rpb3-RpoA insert domain	479	610	IPR011262	GO:0003899(InterPro)\|GO:0006351(InterPro)\|GO:0046983(InterPro)
	Cati3g00246	728	Gene3D	-	459	609	IPR036643	-
	Cati3g00246	728	SMART	rpoldneu2	433	726	IPR011263	GO:0003899(InterPro)\|GO:0006351(InterPro)
	Cati3g00246	728	Pfam	GBF-interacting protein 1 N-terminal	17	55	IPR009719	-
	Cati3g00246	728	Pfam	Uncharacterised protein family (UPF0172)	158	346	IPR005366	GO:0072546(InterPro)
	Cati3g00246	728	Hamap	DNA-directed RNA polymerase subunit Rpo3 [rpo3].	423	727	IPR022842	GO:0003899(InterPro)\|GO:0006351(InterPro)
	Cati3g00246	728	PANTHER	DNA-DIRECTED RNA POLYMERASE	379	728	IPR050518	GO:0001054(PANTHER)\|GO:0001056(PANTHER)\|GO:0003899(PANTHER)\|GO:0005666(PANTHER)\|GO:0005736(PANTHER)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cati3g00246	K03027	DNA-directed RNA polymerases I and III subunit RPAC1
	Cati3g00246	K23569	ER membrane protein complex subunit 8/9

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Cati	Cati-Chr3:1959494	Cati7g02821	Cati-Chr7:63367400	dispersed
	Cati	Cati-Chr3:1959494	Cati3g00247	Cati-Chr3:1959494	tandem