Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cati3g00255	AATTCTCTCTGTGTTCTCTTCTTTCTTCTCTTTATACCATTAAACCTTACAAATTTCAATGGCAATGCTTAGCTTGCCTTCAATCCAAGTATGTTGCTTAGCAGAGAAAAGGCATAAAGATTCTTCAACCAATTCATTGAAGCTTAAAGAATCAAATTCAAGAACAACAAATTACAGAAAAGGTTCTTTTCATCAAGAACGCAAACCCCAGAAGGTGAATCTTGAAATTTCGCCTCATAGAGCTGTGTCGGCTGTGAGGTTAATGCGGATAGAGTTCGGTGGTGCCTTTGCTGACCTTTTAAACGAGAAAGGGAAGGGGTCCGGTGATAACGAGATGGGATATGTTGAAAGAACTCTTGGTTTTTGCACCCGAGATTTGGATGATAGAGATCTCAGATTGATTCTTCGGATTGGATTCTATGAGATTGTAAAGCTAGAGTCCCCTTCATATGCTGTTGTAGATGAGAATGTGAAGCTTGCAAAAGTTGCCCTTAGGCCGGGTGCTGGTAACATGGTCAATGGAATTCTAAGGAAGCTTGTTTTGCTTAAGGAAACTAACTCTCTTCCTTCACCTCAATTGGAGGGCGATGATCGAGCACAAGCACGTGCTCTTGCTACTCTTTATTCTCACCCAGTTTGGATGGTGAGGCGCTGGACAAAATACCTTGGACGTGAAGAAGCTATTAAGCTAATGAGTGTTATACAAGATGGACTACTAAAAGAAGGCTTATGTTCGGTCCAAGATGAGAGTGCAGGTTTGGTAGTTTCCGTTGTGGACCCACAACCCGGAGAGACGATAATCGACTGTTGTGCTGCTCCTGGTGGGAAGACCCTCTTCATGGCAGCCTGTTTGAATGGCAAAGGCATGGTAACGGCAATTGACGTAAATAAAGGACGCTTGAGGATCCTCAAGGAGACGGCCAAACTGCAACAACTTGATGATGTCATCACTACAGTTCATGACGATCTTCGTACATTTCCTGAGAATAACCACGAGGCATATGAAAAAGTGTTGCTTGATGCTCCTTGTTCCGGACTTGGTGTTCTTTCCAAGACGAACTTCTTGATGCGGCTTCCATGTGAGCGGACTCCGTTGGTAAAGCCGGGGGGAGTGCTAGTATATAGCACGTGTTCGATTGATCCTGAAGAGAATGAAGAGAGAGTGGCTTCGTTTCTTCTTAGACATCCGGGATACAACATAGATTCCGTAGAGAGATACGTATCGCCTGAATTTTTGACCGAGCAGGGTTACTATTTCTCGAGCCCGGTGAAACATTTGCTTGATGGAGCCTTTGCAGCACGACTCGTTCGTAACTCGTGATTGTCTATTTCGATGCAAGGGAATAGTTGCTTTTTATGAAGCATCTAAAAAGCAAGAGCGGGATGAAGAAGCTGGACAGCGTTTCCTAAAAGGGAAGGCCGAGGGGAAGGCTGAAGAGGACGCGGATGAGCAATTGATGGTGGACATCGCGGCCTTAGATATTTCCAAGGACATGATTTCTGACAAGAGCAAATAATGGAGGAATTAAGGTAGCAGACTAGGAATGGAGACCTATTATAGCTCCATAGTTATTAGACAAGTTAGAATGGGTGGAAGGCTAACATTTTAGAGGGGGTGGGGGATGTGTTTTTGCTTTACTTGCTCTAGTTCACCTTTTGTATGTGTTACAATGTACCTTGTATACTTATTTGCTCTACTTTACATTTTGTATGTGTTCAATGTGCCTCATAGTAATTATTCTTACCTTTTGTAGTATTTCAT	1762	43.19	MAMLSLPSIQVCCLAEKRHKDSSTNSLKLKESNSRTTNYRKGSFHQERKPQKVNLEISPHRAVSAVRLMRIEFGGAFADLLNEKGKGSGDNEMGYVERTLGFCTRDLDDRDLRLILRIGFYEIVKLESPSYAVVDENVKLAKVALRPGAGNMVNGILRKLVLLKETNSLPSPQLEGDDRAQARALATLYSHPVWMVRRWTKYLGREEAIKLMSVIQDGLLKEGLCSVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLFMAACLNGKGMVTAIDVNKGRLRILKETAKLQQLDDVITTVHDDLRTFPENNHEAYEKVLLDAPCSGLGVLSKTNFLMRLPCERTPLVKPGGVLVYSTCSIDPEENEERVASFLLRHPGYNIDSVERYVSPEFLTEQGYYFSSPVKHLLDGAFAARLVRNS	420

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cati3g00255	420	CDD	AdoMet-MTases	246	356	-	-
	Cati3g00255	420	ProSiteProfiles	SAM-dependent MTase RsmB-NOP-type domain profile.	152	419	IPR001678	GO:0008168(InterPro)
	Cati3g00255	420	PANTHER	NOP2 YEAST -RELATED NOL1-NOP2-FMU SUN DOMAIN-CONTAINING	219	418	IPR023267	GO:0001510(InterPro)\|GO:0008173(InterPro)
	Cati3g00255	420	SUPERFAMILY	NusB-like	104	195	IPR035926	-
	Cati3g00255	420	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	190	418	IPR029063	-
	Cati3g00255	420	PRINTS	Viridiplantae FMU-related RCMT signature	66	89	IPR023268	-
	Cati3g00255	420	PRINTS	Viridiplantae FMU-related RCMT signature	90	106	IPR023268	-
	Cati3g00255	420	MobiDBLite	consensus disorder prediction	23	51	-	-
	Cati3g00255	420	Gene3D	-	96	183	IPR035926	-
	Cati3g00255	420	Gene3D	Vaccinia Virus protein VP39	184	418	IPR029063	-
	Cati3g00255	420	PRINTS	RNA (C5-cytosine) methyltransferase signature	219	233	IPR023267	GO:0001510(InterPro)\|GO:0008173(InterPro)
	Cati3g00255	420	PRINTS	RNA (C5-cytosine) methyltransferase signature	248	258	IPR023267	GO:0001510(InterPro)\|GO:0008173(InterPro)
	Cati3g00255	420	PRINTS	RNA (C5-cytosine) methyltransferase signature	401	418	IPR023267	GO:0001510(InterPro)\|GO:0008173(InterPro)
	Cati3g00255	420	PRINTS	RNA (C5-cytosine) methyltransferase signature	350	366	IPR023267	GO:0001510(InterPro)\|GO:0008173(InterPro)
	Cati3g00255	420	Pfam	NusB family	111	160	IPR006027	GO:0003723(InterPro)\|GO:0006355(InterPro)
	Cati3g00255	420	Pfam	16S rRNA methyltransferase RsmB-F	238	333	IPR049560	-
	Cati3g00255	420	Pfam	16S rRNA methyltransferase RsmB-F	345	416	IPR049560	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cati3g00255	K03500	16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Cati	Cati-Chr3:2039513	Cati5g00419	Cati-Chr5:4396770	dispersed
	Cati	Cati-Chr3:2039510	Cati3g00255	Cati-Chr3:2039513	tandem