Gene detail

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Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cati3g00260	ATGTCCAGAAATTCCGGCGACTCACCGCCGGAAAAGATCATCTACACCTACGGCATCGACATCGTCTCCGGCGACTATCTCGACCGGGGTTCCGGCGACCGAACACTCCAATGCACGGCGGCGAACATGGCGGAATCCGTCGCAGCCGTCGAATCAATCCTACACTACACATTCAACAACAAGGCTCTGCTAGAAGAGGCCCTAACTCATCCTTCGTACTCCGATAGTCCTTCCTACCAACGCCTCGAGTTCGTCGGAGATGCCGTCCTAGGGGCCGTGATCTCCGATTTCGTCTTCGTGACTTACCCCGATCTCGACCCTGGCCAACTGTCTCTTCTTCGTTCCGCCAATATCAGCACCGAGAAGCTCGCTAGGGTTGCGGTTAAGCACGGGATTTACAAGTACGTTAGGGAATTTGTGATTGCGGTTGAGGAAGAAGATGCTATGGTTGTTCACGGTGGACATATGAAAGCCCCCAAGGTACTTGCTGATATTGTGGAATCGGTGGTTGCAGCTGTCTATATTGATTGTGGATCAAACTTGAAAATCCTATGGATGATCATTAGAGGGCTACTTGAACCTCTTGTGATGCTAAATGACATCGAGGAACAACCGCAGCCTATTACATTGCTCTACGAGGCATGTCAGAAGGATCAGAAGCATGTTATTATAAGGCACTGGAGGAAAGGTGATAAAAACATCGCTAGTGTTTACGTGGATGGCAGATTTGTTGCATCTGGTTCTTCAGAGAACAAAGAAAATGCAAAACTTCATGCAGCCGAGGCTGCTTTGTCCAAGTTAAGAAGCTCGAAAAGCAGCGTCTATGATGATTTTATTAAAACCATAGAGATTGAACGGGCCAAACAAAGAAATCGAGCATCAGTCGGGACCCGCACACGAAAGAAGACATACATCGTCGGTTAAAATTAAAATTTGTGACGTGATTCTTGATGTGATGGGAGATGAAAAGCCCAGAGTCAAGGAAGCGGAGAATTCTGCAGCCTTTGCAATGCTATGTGCTCTGCGAGAATCTGGATTTATATGAATGTGTAAGTGTGTAACTAACAAACAACAACAAAGGTCAAATATTATCATATAGACTTGAAATCATTTGAGACCAGCTTGTTTTCGTTAGACCCAAGAGATCAAGTTTTTATACTTGAAACTTAACCTTCACACGGCTCTCACGAAAACATGTTGGTCTCAAGTGAACCTGATCCTTAACATATATATACATTATAAGCATGTATGCATTTCTTTAGGAAAAGTGAGAGCTCCATGGAATTGGAGATGGATGTCTGAAATCAAATCTTGAAATATTCAGAGTTGAATGAAGAAAGAAAAAAAGATGAAAGTGCACCTCTTAGAAGCTTCGAAAACGATACGGTAGCACCCTCCAAAAACATTACGGTTGCACCTTCACGAAACTAAAGTTTTTTGCCCTTCCCCGGAGAAATAATACGATGACACACGTGCCACTGTGAACCCCATGTGAGATCCGTCCATGGTTGGATACGGATCGTTTATGGTTTTCAGTAGATCTGAAGGCTCCGACTGGGGCCAATTTTTGGCCATCTCTAGATCCTGATCCTAGTATATCTTTAAAGAAAAAATTATTTAAAAGTTGTTATTAGATAGGCAAAAGTATTTAAAGTGAAGCAAAAACATGTTCCACCTTCGTACAATTTGTCCATTTTAATAAAAGAAATAGTTGTGGTCCTTTTTTTTCTTTTTGAAGAAATTTGTCTTTTTTATAATTTGAAGTATACATATTAAAGCTAATCACA	1787	42.42	MSRNSGDSPPEKIIYTYGIDIVSGDYLDRGSGDRTLQCTAANMAESVAAVESILHYTFNNKALLEEALTHPSYSDSPSYQRLEFVGDAVLGAVISDFVFVTYPDLDPGQLSLLRSANISTEKLARVAVKHGIYKYVREFVIAVEEEDAMVVHGGHMKAPKVLADIVESVVAAVYIDCGSNLKILWMIIRGLLEPLVMLNDIEEQPQPITLLYEACQKDQKHVIIRHWRKGDKNIASVYVDGRFVASGSSENKENAKLHAAEAALSKLRSSKSSVYDDFIKTIEIERAKQRNRASVGTRTRKKTYIVG	307

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cati3g00260	307	PANTHER	DICER-RELATED	39	270	-	GO:0003723(PANTHER)\|GO:0004525(PANTHER)\|GO:0005634(PANTHER)\|GO:0005737(PANTHER)\|GO:0030422(PANTHER)
	Cati3g00260	307	Pfam	Double-stranded RNA binding motif	207	267	IPR014720	-
	Cati3g00260	307	FunFam	Endoribonuclease dicer-like 1	41	199	-	-
	Cati3g00260	307	SMART	riboneu5	62	203	IPR000999	GO:0004525(InterPro)\|GO:0006396(InterPro)
	Cati3g00260	307	Gene3D	Ribonuclease III domain	35	199	IPR036389	GO:0004525(InterPro)\|GO:0006396(InterPro)
	Cati3g00260	307	Pfam	Ribonuclease III domain	80	178	IPR000999	GO:0004525(InterPro)\|GO:0006396(InterPro)
	Cati3g00260	307	SUPERFAMILY	dsRNA-binding domain-like	160	269	-	-
	Cati3g00260	307	ProSiteProfiles	Ribonuclease III family domain profile.	47	178	IPR000999	GO:0004525(InterPro)\|GO:0006396(InterPro)
	Cati3g00260	307	ProSitePatterns	Ribonuclease III family signature.	80	88	IPR000999	GO:0004525(InterPro)\|GO:0006396(InterPro)
	Cati3g00260	307	Hamap	Ribonuclease 3 [rnc].	50	264	IPR011907	GO:0003723(InterPro)\|GO:0004525(InterPro)\|GO:0006364(InterPro)
	Cati3g00260	307	CDD	RIBOc	63	196	IPR000999	GO:0004525(InterPro)\|GO:0006396(InterPro)
	Cati3g00260	307	Gene3D	-	202	275	-	-
	Cati3g00260	307	ProSiteProfiles	Double stranded RNA-binding domain (dsRBD) profile.	193	269	IPR014720	-
	Cati3g00260	307	SMART	DRBM-3	207	268	IPR014720	-
	Cati3g00260	307	SUPERFAMILY	RNase III domain-like	46	195	IPR036389	GO:0004525(InterPro)\|GO:0006396(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cati3g00260	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Cati	Cati-Chr3:2114660	Cati5g00466	Cati-Chr5:4898949	dispersed
	Cati	Cati-Chr3:2114660	Cati5g01509	Cati-Chr5:18345380	transposed