AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cati3g00265 | ATGCCAAAAGAAACCGGAAAAAACTCGCCGCCGCTCCTCCTCCTCCCCCACGGATCTCAACTCAAACCCGACATCAGATTCAGAGGCGTCCGAAAGCGACCTTGGGGTCGATTCTCCGCCGAGATCAGAGATCCATGGAAGAAAGCTAGGGTTTGGCTCGGCACCTTCGACTCCGCCGTCGCCGCCGCACTCGCCTACGACGCCGCCGCCCGGAGCCTCCGCGGATCCAAGGCCAAGACCAATTTCCCGTCGAACGCCACGTCGGCGTCGTGCTCGTATCACCGCCAACGACGAAACCCTAACCCTAGCGACCTCCATCCGAACCAGCTCGCCGGCTACCAGACGGCTGCCGCACAACAACGGCCGGCGAGTAGCAGCTTGAGCAGCACTCTCGAGTCGTTCAGCGGCGGATCCAGGCCGCCGGTGGTCGTTTTGGCCGGCCGGAGACGGCATCCGCGGTCGCCGCCGGTCGCGGCGGACGATTGCCGCAGCGACTGCGATTCGTCGTCGTCGGTGGTTGTTGACGGAACCGGAATCGACGCCGGAGAAATCGTTTCTTCTGGCTTCGAGAAACCGTTCCGATCGATCGATCTAGATTTGAATTTGCCGCCATTGATGGATGAATTTGAGCTGGATCTTCATTCTACAATCCTTCGACTTTGA | 663 | 60.48 | MPKETGKNSPPLLLLPHGSQLKPDIRFRGVRKRPWGRFSAEIRDPWKKARVWLGTFDSAVAAALAYDAAARSLRGSKAKTNFPSNATSASCSYHRQRRNPNPSDLHPNQLAGYQTAAAQQRPASSSLSSTLESFSGGSRPPVVVLAGRRRHPRSPPVAADDCRSDCDSSSSVVVDGTGIDAGEIVSSGFEKPFRSIDLDLNLPPLMDEFELDLHSTILRL | 220 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cati3g00265 | 220 | ProSiteProfiles | AP2-ERF domain profile. | 26 | 83 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cati3g00265 | 220 | PRINTS | Ethylene responsive element binding protein signature | 27 | 38 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cati3g00265 | 220 | PRINTS | Ethylene responsive element binding protein signature | 65 | 85 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cati3g00265 | 220 | FunFam | Ethylene-responsive transcription factor 2 | 26 | 84 | - | - | |
| Cati3g00265 | 220 | CDD | AP2 | 26 | 83 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cati3g00265 | 220 | SUPERFAMILY | DNA-binding domain | 27 | 84 | IPR016177 | GO:0003677(InterPro) | |
| Cati3g00265 | 220 | SMART | rav1-2 | 26 | 89 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cati3g00265 | 220 | Pfam | AP2 domain | 26 | 75 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cati3g00265 | 220 | Gene3D | AP2-ERF domain | 25 | 85 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cati3g00265 | 220 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 20 | 175 | - | - | |
| Cati3g00265 | 220 | MobiDBLite | consensus disorder prediction | 78 | 141 | - | - | |
| Cati3g00265 | 220 | MobiDBLite | consensus disorder prediction | 78 | 136 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cati3g00265 | K09286 | EREBP-like factor |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cati | Cati-Chr3:2160044 | Cati5g01606 | Cati-Chr5:19829491 | dispersed | |
| Cati | Cati-Chr3:2160044 | Cati3g00409 | Cati-Chr3:3411778 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cati10g00124 | . | 147 | 422 | CBF gene family | AT2G41710 | 43.929 | 9.99e-52 | 172.0 | |
| Cati10g00971 | . | 111 | 157 | CBF gene family | AT4G13040 | 87.234 | 7.11e-25 | 95.5 | |
| Cati10g00972 | . | 111 | 157 | CBF gene family | AT4G13040 | 87.234 | 4.95e-25 | 95.9 | |
| Cati10g01071 | . | 79 | 180 | CBF gene family | AT3G23240 | 75.49 | 7.15e-55 | 172.0 | |
| Cati10g02278 | . | 1 | 555 | CBF gene family | AT4G37750 | 46.0 | 1.04e-150 | 441.0 | |
| Cati10g02808 | ACH | 8 | 257 | CBF gene family | AT2G40340 | 41.538 | 9.84e-48 | 165.0 | |
| Cati10g03028 | . | 32 | 222 | CBF gene family | AT5G51990 | 54.974 | 5.43e-63 | 201.0 | |
| Cati10g03031 | . | 32 | 212 | CBF gene family | AT5G51990 | 52.486 | 2.30e-62 | 191.0 | |
| Cati10g03033 | . | 1 | 216 | CBF gene family | AT4G25470 | 51.613 | 2.36e-66 | 201.0 | |
| Cati10g03176 | . | 142 | 327 | CBF gene family | AT1G78080 | 59.686 | 6.27e-71 | 218.0 | |
| Cati10g03486 | . | 5 | 584 | CBF gene family | AT5G17430 | 39.658 | 5.51e-116 | 357.0 | |
| Cati11g00266 | . | 56 | 246 | CBF gene family | AT3G54320 | 74.346 | 1.01e-89 | 275.0 | |
| Cati11g00302 | . | 28 | 106 | CBF gene family | AT3G15210 | 54.43 | 2.57e-15 | 70.9 | |
| Cati11g00332 | . | 1 | 466 | CBF gene family | AT4G37750 | 52.684 | 5.48e-146 | 431.0 | |
| Cati11g00333 | . | 320 | 466 | CBF gene family | AT4G37750 | 85.714 | 4.17e-89 | 276.0 | |
| Cati11g00443 | ACH | 17 | 168 | CBF gene family | AT2G23340 | 61.842 | 2.87e-53 | 165.0 | |
| Cati11g00448 | . | 1 | 324 | CBF gene family | AT4G36920 | 65.014 | 3.94e-126 | 372.0 | |
| Cati11g00487 | . | 21 | 196 | CBF gene family | AT4G34410 | 43.82 | 1.30e-28 | 104.0 | |
| Cati11g00747 | . | 19 | 95 | CBF gene family | AT5G19790 | 72.5 | 2.05e-32 | 120.0 | |
| Cati11g01488 | . | 1 | 236 | CBF gene family | AT5G47230 | 41.129 | 8.04e-40 | 138.0 | |
| Cati11g01491 | . | 14 | 157 | CBF gene family | AT5G51190 | 50.694 | 8.58e-39 | 129.0 | |
| Cati11g01495 | . | 14 | 212 | CBF gene family | AT5G51190 | 44.248 | 1.59e-41 | 146.0 | |
| Cati11g01791 | . | 130 | 255 | CBF gene family | AT1G50680 | 31.25 | 6.19e-10 | 57.4 | |
| Cati11g02263 | . | 35 | 198 | CBF gene family | AT5G51990 | 50.0 | 4.52e-49 | 155.0 | |
| Cati11g02572 | . | 118 | 318 | CBF gene family | AT4G36920 | 70.874 | 2.71e-84 | 261.0 | |
| Cati11g02571 | . | 118 | 309 | CBF gene family | AT4G36920 | 73.096 | 8.33e-84 | 261.0 | |
| Cati11g02573 | . | 1 | 311 | CBF gene family | AT2G28550 | 53.797 | 4.73e-82 | 256.0 | |
| Cati11g02909 | ACH | 1 | 175 | CBF gene family | AT5G25190 | 65.574 | 1.22e-73 | 218.0 | |
| Cati11g02990 | . | 46 | 249 | CBF gene family | AT3G54320 | 60.87 | 4.18e-74 | 235.0 | |
| Cati11g03265 | ACH | 1 | 568 | CBF gene family | AT1G51190 | 63.776 | 0.0 | 659.0 | |
| Cati12g00230 | . | 42 | 260 | CBF gene family | AT3G54320 | 60.417 | 1.04e-83 | 258.0 | |
| Cati12g01888 | . | 20 | 338 | CBF gene family | AT1G16060 | 39.776 | 7.31e-57 | 186.0 | |
| Cati12g02287 | . | 33 | 436 | CBF gene family | AT2G28550 | 44.934 | 4.49e-80 | 253.0 | |
| Cati12g02554 | ACH | 9 | 148 | CBF gene family | AT1G19210 | 57.718 | 4.44e-51 | 167.0 | |
| Cati12g02671 | . | 109 | 215 | CBF gene family | AT4G13040 | 63.717 | 1.26e-45 | 149.0 | |
| Cati1g00394 | . | 1 | 314 | CBF gene family | AT4G36920 | 64.345 | 7.17e-123 | 363.0 | |
| Cati1g00395 | . | 1 | 314 | CBF gene family | AT4G36920 | 64.13 | 4.07e-124 | 367.0 | |
| Cati1g00399 | ACH | 18 | 168 | CBF gene family | AT2G23340 | 58.788 | 3.87e-55 | 171.0 | |
| Cati1g00469 | . | 6 | 466 | CBF gene family | AT4G37750 | 39.544 | 6.52e-83 | 268.0 | |
| Cati1g01034 | . | 26 | 569 | CBF gene family | AT5G10510 | 49.126 | 3.75e-134 | 398.0 | |
| Cati1g01527 | . | 106 | 138 | CBF gene family | AT5G47220 | 70.588 | 2.64e-09 | 50.1 | |
| Cati2g00041 | ACH | 35 | 119 | CBF gene family | AT5G25810 | 77.647 | 1.20e-43 | 142.0 | |
| Cati2g00157 | . | 59 | 231 | CBF gene family | AT5G52020 | 54.237 | 2.50e-45 | 149.0 | |
| Cati2g00283 | . | 10 | 343 | CBF gene family | AT4G23750 | 42.162 | 1.73e-67 | 214.0 | |
| Cati2g00302 | . | 26 | 335 | CBF gene family | AT1G64380 | 43.827 | 2.13e-58 | 196.0 | |
| Cati2g00684 | ACH | 1 | 244 | CBF gene family | AT3G16770 | 43.446 | 4.71e-56 | 177.0 | |
| Cati2g00716 | . | 10 | 183 | CBF gene family | AT1G71450 | 55.056 | 4.86e-58 | 178.0 | |
| Cati2g00717 | . | 22 | 165 | CBF gene family | AT1G71450 | 44.138 | 1.94e-29 | 107.0 | |
| Cati2g00718 | . | 22 | 147 | CBF gene family | AT1G71450 | 44.444 | 9.05e-31 | 108.0 | |
| Cati2g01035 | . | 27 | 330 | CBF gene family | AT1G50680 | 50.489 | 3.16e-86 | 263.0 | |
| Cati2g01066 | . | 29 | 166 | CBF gene family | AT5G13330 | 53.289 | 3.39e-39 | 134.0 | |
| Cati2g02673 | ACH | 2 | 196 | CBF gene family | AT1G15360 | 56.436 | 5.52e-72 | 214.0 | |
| Cati3g00265 | . | 25 | 225 | CBF gene family | AT1G50640 | 47.115 | 5.12e-37 | 127.0 | |
| Cati3g00368 | . | 132 | 267 | CBF gene family | AT4G28140 | 49.635 | 4.36e-32 | 117.0 | |
| Cati3g00409 | ACH | 14 | 131 | CBF gene family | AT3G15210 | 58.73 | 1.12e-38 | 132.0 | |
| Cati3g01702 | . | 253 | 389 | CBF gene family | AT4G37750 | 58.394 | 1.08e-42 | 146.0 | |
| Cati3g01703 | . | 320 | 389 | CBF gene family | AT4G37750 | 75.714 | 4.26e-32 | 122.0 | |
| Cati3g01704 | . | 253 | 389 | CBF gene family | AT4G37750 | 55.034 | 1.14e-42 | 147.0 | |
| Cati3g01709 | . | 21 | 151 | CBF gene family | AT5G61890 | 49.275 | 2.29e-37 | 127.0 | |
| Cati3g03482 | ACH | 1 | 242 | CBF gene family | AT3G16770 | 40.856 | 3.40e-44 | 147.0 | |
| Cati3g03930 | ACH | 2 | 119 | CBF gene family | AT5G25810 | 60.331 | 3.43e-44 | 144.0 | |
| Cati4g00416 | . | 1 | 269 | CBF gene family | AT4G28140 | 38.279 | 3.52e-53 | 176.0 | |
| Cati4g00479 | . | 29 | 200 | CBF gene family | AT5G44210 | 46.411 | 8.88e-41 | 136.0 | |
| Cati4g00932 | . | 109 | 185 | CBF gene family | AT4G27950 | 43.59 | 5.33e-13 | 62.0 | |
| Cati4g01733 | . | 27 | 106 | CBF gene family | AT3G15210 | 55.0 | 3.97e-16 | 75.1 | |
| Cati4g01734 | . | 27 | 106 | CBF gene family | AT3G15210 | 55.0 | 4.20e-16 | 75.1 | |
| Cati4g02737 | . | 27 | 114 | CBF gene family | AT5G44210 | 48.864 | 7.34e-21 | 81.3 | |
| Cati4g03291 | ACH | 22 | 118 | CBF gene family | AT1G12980 | 64.948 | 1.57e-34 | 127.0 | |
| Cati5g00030 | ACH | 6 | 185 | CBF gene family | AT1G19210 | 50.276 | 1.64e-54 | 169.0 | |
| Cati5g00251 | . | 47 | 231 | CBF gene family | AT5G11590 | 58.049 | 2.08e-61 | 192.0 | |
| Cati5g01267 | . | 66 | 138 | CBF gene family | AT2G33710 | 71.622 | 3.83e-31 | 112.0 | |
| Cati5g01268 | . | 14 | 202 | CBF gene family | AT4G34410 | 42.927 | 5.91e-33 | 119.0 | |
| Cati5g01269 | . | 23 | 202 | CBF gene family | AT4G34410 | 41.885 | 3.82e-34 | 122.0 | |
| Cati5g01476 | . | 28 | 97 | CBF gene family | AT3G15210 | 55.714 | 1.85e-15 | 72.4 | |
| Cati5g01475 | . | 19 | 106 | CBF gene family | AT3G15210 | 50.0 | 6.89e-19 | 81.3 | |
| Cati5g01606 | ACH | 18 | 81 | CBF gene family | AT3G15210 | 90.625 | 8.36e-37 | 125.0 | |
| Cati5g01656 | . | 5 | 199 | CBF gene family | AT1G15360 | 60.377 | 1.06e-73 | 219.0 | |
| Cati5g03023 | . | 94 | 558 | CBF gene family | AT5G57390 | 50.851 | 7.41e-133 | 393.0 | |
| Cati6g00083 | . | 8 | 85 | CBF gene family | AT5G19790 | 61.538 | 5.75e-26 | 102.0 | |
| Cati6g00105 | ACH | 1 | 199 | CBF gene family | AT1G15360 | 55.276 | 1.09e-70 | 211.0 | |
| Cati6g00226 | . | 34 | 221 | CBF gene family | AT5G11590 | 58.947 | 2.08e-63 | 196.0 | |
| Cati6g00294 | . | 8 | 160 | CBF gene family | AT2G36450 | 67.974 | 1.32e-56 | 174.0 | |
| Cati6g00441 | . | 1 | 311 | CBF gene family | AT2G28550 | 59.327 | 1.30e-97 | 298.0 | |
| Cati6g01023 | . | 96 | 382 | CBF gene family | AT4G13620 | 40.273 | 4.74e-59 | 191.0 | |
| Cati6g03389 | . | 119 | 411 | CBF gene family | AT1G72570 | 63.39 | 2.05e-116 | 353.0 | |
| Cati6g04445 | . | 135 | 174 | CBF gene family | AT2G39250 | 55.0 | 1.06e-07 | 48.5 | |
| Cati6g04446 | . | 135 | 195 | CBF gene family | AT2G39250 | 40.984 | 9.19e-08 | 48.5 | |
| Cati6g04586 | . | 86 | 163 | CBF gene family | AT5G61890 | 74.359 | 7.34e-35 | 127.0 | |
| Cati6g04587 | . | 86 | 163 | CBF gene family | AT5G61890 | 74.359 | 6.91e-35 | 127.0 | |
| Cati7g00111 | ACH | 1 | 238 | CBF gene family | AT1G24590 | 37.05 | 1.10e-41 | 147.0 | |
| Cati7g00360 | . | 19 | 95 | CBF gene family | AT5G19790 | 75.949 | 2.70e-33 | 123.0 | |
| Cati7g00673 | . | 37 | 159 | CBF gene family | AT1G68550 | 42.188 | 7.96e-21 | 85.5 | |
| Cati7g00700 | . | 1 | 341 | CBF gene family | AT1G13260 | 62.57 | 1.13e-142 | 405.0 | |
| Cati7g01112 | . | 21 | 109 | CBF gene family | AT3G15210 | 51.685 | 5.32e-20 | 84.7 | |
| Cati7g01473 | . | 114 | 308 | CBF gene family | AT4G36920 | 72.77 | 4.09e-89 | 278.0 | |
| Cati7g01474 | . | 114 | 308 | CBF gene family | AT4G36920 | 79.487 | 1.22e-93 | 289.0 | |
| Cati7g01475 | . | 4 | 380 | CBF gene family | AT2G28550 | 44.496 | 8.00e-65 | 214.0 | |
| Cati7g01709 | ACH | 8 | 252 | CBF gene family | AT2G40340 | 43.874 | 4.37e-48 | 163.0 | |
| Cati7g02009 | . | 21 | 106 | CBF gene family | AT3G15210 | 54.651 | 5.10e-20 | 82.0 | |
| Cati8g00108 | . | 19 | 293 | CBF gene family | AT4G27950 | 40.717 | 6.36e-58 | 190.0 | |
| Cati8g00187 | . | 38 | 95 | CBF gene family | AT1G01250 | 67.241 | 1.51e-22 | 86.3 | |
| Cati8g00304 | . | 44 | 209 | CBF gene family | AT5G51190 | 51.031 | 1.80e-54 | 175.0 | |
| Cati8g00305 | . | 77 | 231 | CBF gene family | AT5G47220 | 58.537 | 5.85e-45 | 151.0 | |
| Cati8g00492 | . | 40 | 322 | CBF gene family | AT2G40220 | 38.416 | 6.05e-37 | 136.0 | |
| Cati8g00884 | . | 43 | 358 | CBF gene family | AT4G36920 | 52.836 | 1.96e-94 | 291.0 | |
| Cati8g01244 | . | 36 | 218 | CBF gene family | AT3G23240 | 56.545 | 2.40e-62 | 202.0 | |
| Cati8g01243 | . | 1 | 215 | CBF gene family | AT3G23240 | 54.751 | 3.49e-74 | 222.0 | |
| Cati8g01360 | . | 62 | 427 | CBF gene family | AT4G36920 | 50.126 | 3.14e-95 | 293.0 | |
| Cati8g01361 | . | 62 | 427 | CBF gene family | AT4G36920 | 51.276 | 1.26e-95 | 294.0 | |
| Cati8g01362 | . | 62 | 427 | CBF gene family | AT4G36920 | 44.898 | 9.53e-81 | 255.0 | |
| Cati8g01936 | . | 40 | 234 | CBF gene family | AT3G54320 | 73.333 | 1.93e-90 | 277.0 | |
| Cati8g02171 | . | 1 | 338 | CBF gene family | AT4G36920 | 56.154 | 1.28e-110 | 332.0 | |
| Cati8g02172 | . | 1 | 338 | CBF gene family | AT4G36920 | 56.154 | 3.25e-111 | 330.0 | |
| Cati8g02739 | . | 1 | 498 | CBF gene family | AT5G65510 | 42.71 | 1.69e-99 | 307.0 | |
| Cati8g02738 | . | 1 | 498 | CBF gene family | AT5G65510 | 47.544 | 7.85e-127 | 377.0 | |
| Cati8g03009 | . | 29 | 395 | CBF gene family | AT3G54320 | 49.74 | 6.01e-104 | 311.0 | |
| Cati8g04469 | . | 61 | 104 | CBF gene family | AT3G23240 | 52.273 | 5.62e-10 | 52.4 | |
| Cati8g04470 | . | 61 | 104 | CBF gene family | AT3G23240 | 52.273 | 5.62e-10 | 52.4 | |
| Cati8g04471 | . | 61 | 104 | CBF gene family | AT3G23240 | 52.273 | 5.62e-10 | 52.4 | |
| Cati8g04472 | . | 61 | 104 | CBF gene family | AT3G23240 | 52.273 | 5.62e-10 | 52.4 | |
| Cati9g00082 | . | 1 | 356 | CBF gene family | AT1G53910 | 48.942 | 1.85e-74 | 236.0 | |
| Cati9g00269 | . | 35 | 220 | CBF gene family | AT5G11590 | 49.468 | 8.49e-48 | 154.0 | |
| Cati9g00371 | . | 1 | 199 | CBF gene family | AT1G15360 | 63.927 | 2.42e-80 | 236.0 | |
| Cati9g00425 | . | 72 | 223 | CBF gene family | AT1G80580 | 50.92 | 1.59e-29 | 110.0 | |
| Cati9g00433 | . | 1 | 167 | CBF gene family | AT5G25190 | 60.355 | 8.72e-60 | 186.0 | |
| Cati9g00468 | . | 11 | 343 | CBF gene family | AT1G16060 | 56.198 | 1.18e-116 | 340.0 | |
| Cati9g00506 | . | 20 | 178 | CBF gene family | AT5G61890 | 54.938 | 9.39e-51 | 164.0 | |
| Cati9g01840 | . | 33 | 167 | CBF gene family | AT5G61890 | 58.519 | 2.21e-44 | 146.0 | |
| Cati9g03799 | . | 1 | 436 | CBF gene family | AT2G28550 | 45.882 | 1.78e-95 | 295.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Cati | AP2 | 1.1e-11 | CL0081 | TF | AP2/ERF-ERF |