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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00274 ATGGCCACACACTCACTCATTCACCTCTCTACCAACCTACCTCCCTCTTCCACCACCACCACCACCGCCGCCGCCGCCTCTTCTTTCTCTCCCTTCTTCTTCAAAACATGCCGCCGTCCTCCACCGCCGCGACGCCGTCCTGCCGCCGCCGTCTCCTGCTCCTTCACCTCCATGGAGTCCGCAAAGATTAAGGTCGTCGGCGTCGGCGGCGGTGGCAACAATGCCGTTAACCGCATGATTGGTACTGGTGGGAATCCACTTTTAGGAGAACAGGCTGCAGAAGAATCAAAAGAGGCCATTGGTAATGCTCTTAGTGGTTCAGACCTTGTGTTCATAACAGCAGGTATGGGTGGTGGTACAGGTTCTGGTGCTGCTCCAGTTGTAGCCCAGATAGCAAAAGAAGCCGGATATTTAACTGTTGGGGTCGTAACTTATCCTTTCAGCTTCGAAGGACGCAAAAGATCAGCTTTGGAGGCTATTGAGAAGCTGCAAAAGAACGTTGACACACTTATAGTGATCCCGAATGACCGTTTATTGGATATTGCTGATGAGCAAACACCGCTTCAGGATGCTTTTCTTCTTGCTGACGATGTACTCCGCCAAGGAGTTCAAGGGATTTCAGATATAATTACGGCGGTGATGAAAGACTCGGGAACCGCAATGCTCGGTGTTGGGGTTTCATCCAGCAAAAACCGAGCTGAAGAAGCGGCTGAACAAGCAACTCTTGCTCCTTTAATTGGATCGTCAATCAAATCCGCTACAGGAGTTGTTTATAACATCACCGGAGGGAAAGACATAACTTTGCAAGAAGTCAATAGGGTCTCTCAGAAATCTCTCCTGTCCGACCCGAAAGGAGCAAAACTCGTCGATAGAAATCAAGAAACCACACAGCCGTCGATCCCGTTGACCACACCTTCCCCCGCTCCGTCTCGCTCTAGGAAACTTTTCTTCTGA 954 50.52 MATHSLIHLSTNLPPSSTTTTTAAAASSFSPFFFKTCRRPPPPRRRPAAAVSCSFTSMESAKIKVVGVGGGGNNAVNRMIGTGGNPLLGEQAAEESKEAIGNALSGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSALEAIEKLQKNVDTLIVIPNDRLLDIADEQTPLQDAFLLADDVLRQGVQGISDIITAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIKSATGVVYNITGGKDITLQEVNRVSQKSLLSDPKGAKLVDRNQETTQPSIPLTTPSPAPSRSRKLFF 317
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00274 317 MobiDBLite consensus disorder prediction 290 310 - -
Cati3g00274 317 PRINTS Cell division protein FtsZ signature 137 158 IPR003008 GO:0005525(InterPro)
Cati3g00274 317 PRINTS Cell division protein FtsZ signature 198 220 IPR003008 GO:0005525(InterPro)
Cati3g00274 317 PRINTS Cell division protein FtsZ signature 109 129 IPR003008 GO:0005525(InterPro)
Cati3g00274 317 Gene3D - 220 280 IPR037103 -
Cati3g00274 317 MobiDBLite consensus disorder prediction 1 21 - -
Cati3g00274 317 Pfam Tubulin-FtsZ family, GTPase domain 80 182 IPR003008 GO:0005525(InterPro)
Cati3g00274 317 SUPERFAMILY Tubulin C-terminal domain-like 210 275 IPR008280 -
Cati3g00274 317 SMART Tubulin-C-4 210 314 IPR018316 -
Cati3g00274 317 MobiDBLite consensus disorder prediction 283 317 - -
Cati3g00274 317 ProSitePatterns FtsZ protein signature 2. 108 129 IPR020805 GO:0005525(InterPro)
Cati3g00274 317 PANTHER CELL DIVISION PROTEIN FTSZ-RELATED 81 276 IPR045061 GO:0003924(PANTHER)|GO:0003924(InterPro)|GO:0005525(PANTHER)|GO:0005525(InterPro)|GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0010020(PANTHER)|GO:0032153(PANTHER)|GO:0048285(PANTHER)|GO:0051301(PANTHER)
Cati3g00274 317 Pfam FtsZ family, C-terminal domain 218 276 IPR024757 -
Cati3g00274 317 Gene3D Tubulin-FtsZ, GTPase domain 54 219 IPR036525 -
Cati3g00274 317 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 117 123 IPR017975 GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Cati3g00274 317 SUPERFAMILY Tubulin nucleotide-binding domain-like 61 211 IPR036525 -
Cati3g00274 317 SMART Tubulin-4 62 214 IPR003008 GO:0005525(InterPro)
Cati3g00274 317 CDD FtsZ-type1 81 276 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00274 K03531 cell division protein FtsZ
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:2240997 Cati9g03792 Cati-Chr9:82007545 dispersed
Cati Cati-Chr3:2240997 Cati3g00275 Cati-Chr3:2240997 tandem