AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00295 ACAAATTCTATTACATTTCAAGCCTTTGAAAGAGGGTATAAATGTCATTTTTCACAAATTCCCACTTGAGGAATAAAATTCAACTTGCCTTCAAGAAAGAGCAAAAAAAAAAGGGGGTTGATGTTGTGTGGAACGACGGAGACGATGATGAAGAAGAAACAACACCACCCTAATCTCATCTTTTTCAAGAACCCACTTCACTAACCCACCAATCTTCCAAAACCCTAATCCAAATCTTTCACTTTCTTGTGATTTCTTTCATCATTTTCATCATCTCCAAGAAAAACCCACATGGAATTTGCAGCAATTGAAGCTTCAATTTGGAACACTTCATCATACAAACCACCCCCTAAACTCTCCCTTTTCAAATCATCCCCAAAAGGGTGCCCAAAAATCTTACATTGTTCAAGATTTTCAAGATTCAAGAAAAGGGTTGTTGTTCTTGAATCAAGATTCTCGATAAATAGTTGTTATAGAGTTGTTCGAGAGGATAGAGGGTTAAGATCCATTTGGGTTAAAAGTGGTAATGTGGAAAGCCACTCAAAACCCCCAAATTTGGGGTTTGAAATTTGGGTCAAGAAAAGATTGGTTTTGATGGCTGTTTGTTGTGGGGTTTTAGGGTTTGGATGCAAAAGGGTTCTTGCTGCTGAAGGTGTTTTGAATGGTGGTGGGTATGTGGGTTTAGACCAGATTAAGTTGTCATTGATGAACTCTTTGCCAAAAGTTTTGATGGTTCTTAAGGTGTTAAAGGAACAAGGTTTGATTCTGGCTGCCCTTTTTGGTCTTTCTGCATTTTTCTCCATGGCTGAAACTTCAATCACCACTCTTTGGCCTTGGAAGATACGAGAGTTGGCTGAGAAAGAGTCTGAGAACGGTGTTTTCAAAATGCTACGCAATGATGTTACTCGGTTTTTAACAACCATTCTTATTGGCACAACTGTTGTCAATATTGGAGCAACGGCATTAGTCACAGAAGCAGCAACCGCGATATTCGGTGAAGCAGGTGTTAGTGCAGCCACAGGAGTAATGACGGTTGCGGTTTTGCTACTCACTGAAATAACTCCAAAAAGTATAGCCGTTCATAATGCCACGGAGGTTGCAAGATTTGTGAGTTGTAACGTATCTCTCAATGGGAATGCTGAAATTGCTTGGTCTGAAAGGAAGAAGGATATGATTGAAAATGTTTTAGAAATAAAAGACACGTACGTTCGAGAGGTTATGACGCCTTTGGTTGACGTTGTAGCCAGTGATTCTAGTGCAACACTCGTCGATTTCCACACCCTGTGGGGAGACCTACTAGAAAGTTCCACGGTGGGGGATATGGCTCATAAACCTGCTTACTTTGTTCCTGATTCAATGTCGGTTTGGAATCTTCTTAGAGAATTTCGCATCCGGAAGGTACACATGGCGGTTGTTCTGAATGAATATGGCGGGACCGTTGGAATTGTAACGTTGGAAGATGTGGTTGAAGAAATTGTTGGTGAAATTTTTGATGAAAATGATTCGAAAGAGGAAATCGAGAAAAAGACCGGGTATATTGTGATGCGGGCTGAAGGAATTTATGATGGGCATCAATACGAAACGGTATCAGGGTTTGTGTGCGAGGCGTTTGGATACATCCCGAAAACTGGCGAAAGTATAAGAGTGGTACTAGAGAAGGAAGAAGAGCATGAAGAGTATACGGAGGACCAGGGCGATCGGCAACATCAAAACCAGAAAGAAAAGAACCAAATATTTCAAATAGAGATTTTGGCGGGCAATGCAAGAAAGGTTGGTGCAGTGAGGTTTGAACGAGTAAATGGCCACGAGTCGGAAAGCACGAAGGACGTGAAGAAGTTGGTTCCGAAGATCATGAAGAGGAAATATGATGATGAAAGAGGAGGTAGGATTGGGGAAGAGGAAGAAGAGGAAGAAGAAGAAGAAGGGGAGAAACATGAAGTGAAAGAGGGAGAGGATAAACTGTTTTGAGATTGAAATGAAATAGGAAAATTTGTAGATGTAGAGAGGGATTATTGATTGATATATGGGACATGGTTGGAATTCATAATAAAAGAGTTACAAAGGGGAGAGGGGGCTCATGCTTGTTTTCCAAATATAAAGCAAAAAAGGAAAGCATTTTCTGGTACATATATGAATACATACATGTTCACGGGTTCGGTTGCAAATCGGTTTTAGGTTTATGAACATGGGGACAAAGGAAACCCAAATGGGGCAGCCTACCGGTTAAGGCTTGTGGAAGGTTTAACAACCAACCCAAGTTCGAATCCGGGGGTGAGCAACCAGGGG 2286 41.21 MEFAAIEASIWNTSSYKPPPKLSLFKSSPKGCPKILHCSRFSRFKKRVVVLESRFSINSCYRVVREDRGLRSIWVKSGNVESHSKPPNLGFEIWVKKRLVLMAVCCGVLGFGCKRVLAAEGVLNGGGYVGLDQIKLSLMNSLPKVLMVLKVLKEQGLILAALFGLSAFFSMAETSITTLWPWKIRELAEKESENGVFKMLRNDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAATGVMTVAVLLLTEITPKSIAVHNATEVARFVSCNVSLNGNAEIAWSERKKDMIENVLEIKDTYVREVMTPLVDVVASDSSATLVDFHTLWGDLLESSTVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIEKKTGYIVMRAEGIYDGHQYETVSGFVCEAFGYIPKTGESIRVVLEKEEEHEEYTEDQGDRQHQNQKEKNQIFQIEILAGNARKVGAVRFERVNGHESESTKDVKKLVPKIMKRKYDDERGGRIGEEEEEEEEEEGEKHEVKEGEDKLF 558
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00295 558 ProSiteProfiles CBS domain profile. 344 402 IPR000644 -
Cati3g00295 558 MobiDBLite consensus disorder prediction 457 476 - -
Cati3g00295 558 Pfam Transporter associated domain 427 502 IPR005170 -
Cati3g00295 558 CDD CBS-pair-CorC-HlyC-assoc 306 393 IPR044751 -
Cati3g00295 558 MobiDBLite consensus disorder prediction 532 548 - -
Cati3g00295 558 Gene3D - 406 488 IPR016169 -
Cati3g00295 558 Gene3D - 288 334 IPR046342 -
Cati3g00295 558 Gene3D - 340 405 - -
Cati3g00295 558 Pfam Cyclin M transmembrane N-terminal domain 157 274 IPR002550 -
Cati3g00295 558 ProSiteProfiles CNNM transmembrane domain profile. 148 273 IPR002550 -
Cati3g00295 558 SUPERFAMILY FAD-binding-transporter-associated domain-like 426 509 IPR036318 GO:0050660(InterPro)
Cati3g00295 558 Coils Coil 536 556 - -
Cati3g00295 558 PANTHER HEMOLYSIN-RELATED 425 527 - -
Cati3g00295 558 Pfam CBS domain 341 396 IPR000644 -
Cati3g00295 558 MobiDBLite consensus disorder prediction 525 558 - -
Cati3g00295 558 SUPERFAMILY CBS-domain pair 293 399 IPR046342 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00295 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:2397441 Cati3g00706 Cati-Chr3:7758435 dispersed