AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00301 CGCCAACTCCAAAGTTAACCCTAAAATTGAAAATCCCCAAATTTGAAATTCTTAATCTGAAAGGCCGTTGAATGTAATCATATTCACTCGATTCGATTCGAAATCCTTGCAATTTCAGATTTGGGATTTAGGGTTTAGTTCAAGATGAATGTTGGCGATCTTCACAAGGTTTGGGAAATCAGAACCTTAAAGAGGAAAGTTGGAGGAGATGAAGCTAAGAGATTCCTTGAGAAAATCGCCAAACAGGTTCAACCGATCATGCGCAAGCATAAATGGCGTGTCAAAGTTCTATCCGAGATGTGTCCCAAAAACGATCGTCTTCTAGGTTTAAACGTCGGCCGTGGTATTCATGTGAAGCTGAGACTTCGAAGACCGAATACGGATTGGGCTTGGTTACCTTTTGATGAAGTTCTTGATACAATGCTACATGAACTCTGCCATAACGCCATTAGTCCTCATAATGCCAGTTTCTACGAACTTTGGAATGAGCTCAGAAAGGAATGTGAGCAGCTGCTTAGCGAAGGAATTTCTGGATCCGGAGCTGGGTTCGATCTTCCAGGCAGACGTTTGGGTGGATTTTCTCGTCAACCTCCTCTCTCATCTCTCCGCCAGACTGCACTTCTTGCTGCAGAAAATAGAAAACGCCAAGGATCGCTTTTACCATCAGGACCTCAACGCCTTGGTGGTGATAAATCCGTCAAATCTGCCCTAACTCCTGTACAAGCAGCTGCAATGGCTGCAGAAAGGAGACTTCAAGATGATATATGGTGTCACCTAAACGAAATAGTTGAAGAAGAAGAAGAAGAATGTGGCGCTAGTGTCCCACAAGAACACCAATATACTAGAAACTCGGCGTCTTCTAGCGGTCTTGGTGCCGATAAAAATCCCAAGTCTCAGAAAAGAAATCGTCAAGAAACCAATGATCTGCCATCTCAGTGCTGTGGTGGTCATTTGAAACCATATTTCGTTGACTTAACCGATGGTCCTTCGGTATCCAAAGGCATATCAACTGATAAAAGAAGTCGCCAAACGGAAAAGGGCACAAATGTGCCTTCACCACGCAATTTTGAGAAAAAATGTATCGATTTAACAGACGATGATGCTTCTACTAGCAATCAAAAAACAGGATGTGACACAAATTCATCTGGGTGGGAGTGCATGATGTGCACCTTGCTGAATCCGGTTTTGGCTCCAATCTGTGAGCTTTGCGGAACCCACAAACCGAAAGCTATAGAAGACAAGTACAAGGCGTGGTCGTGCAAATTTTGTACGCTGGAAAACAGCGTGAAGTTAGAGAAATGTGGAGCTTGTGGGCAATGGAGATATTCTTATGGCCAACCGATAGCAACCGCTTCACCAAATGTGGGTACTTAACACTAACTCGAACGATTTTAAGACCATGTATTCTTTTTGGTGCTGTGGATGGCTGTTAACTTGTTTATAGAGGTTTCGATGCACATATTTTTGGTTTTTCGCCATGCTTGGCTGATGATGGGGGCTTTTTTCCGTTGGTTTTGGGCATGCAACGGTTTTAAGTTTTGCGGATGACTTGAAAGATTACTATATTGAAATTTGAAATTAATCAGCATATTTTAGCCTCTTCTTGATCACTAATGTTACTCAACAAGATTACTGTAATCTGGATATCTATGGAAGATGATAGTGTAGTCATTATGATATGATAAATGCTTTAGATTA 1698 42.05 MNVGDLHKVWEIRTLKRKVGGDEAKRFLEKIAKQVQPIMRKHKWRVKVLSEMCPKNDRLLGLNVGRGIHVKLRLRRPNTDWAWLPFDEVLDTMLHELCHNAISPHNASFYELWNELRKECEQLLSEGISGSGAGFDLPGRRLGGFSRQPPLSSLRQTALLAAENRKRQGSLLPSGPQRLGGDKSVKSALTPVQAAAMAAERRLQDDIWCHLNEIVEEEEEECGASVPQEHQYTRNSASSSGLGADKNPKSQKRNRQETNDLPSQCCGGHLKPYFVDLTDGPSVSKGISTDKRSRQTEKGTNVPSPRNFEKKCIDLTDDDASTSNQKTGCDTNSSGWECMMCTLLNPVLAPICELCGTHKPKAIEDKYKAWSCKFCTLENSVKLEKCGACGQWRYSYGQPIATASPNVGT 409
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00301 409 MobiDBLite consensus disorder prediction 228 247 - -
Cati3g00301 409 SUPERFAMILY Ran binding protein zinc finger-like 332 359 IPR036443 -
Cati3g00301 409 Gene3D - 328 369 - -
Cati3g00301 409 PANTHER DNA-DEPENDENT METALLOPROTEASE WSS1 1 408 IPR053000 GO:0005634(PANTHER)|GO:0006281(PANTHER)|GO:0008237(PANTHER)
Cati3g00301 409 ProSiteProfiles WLM domain profile. 1 204 IPR013536 -
Cati3g00301 409 MobiDBLite consensus disorder prediction 220 265 - -
Cati3g00301 409 MobiDBLite consensus disorder prediction 277 305 - -
Cati3g00301 409 ProSiteProfiles Zinc finger RanBP2 type profile. 366 395 IPR001876 -
Cati3g00301 409 MobiDBLite consensus disorder prediction 165 184 - -
Cati3g00301 409 Pfam WLM domain 8 203 IPR013536 -
Cati3g00301 409 ProSiteProfiles Zinc finger RanBP2 type profile. 332 361 IPR001876 -
Cati3g00301 409 ProSitePatterns Zinc finger RanBP2-type signature. 336 355 IPR001876 -
Cati3g00301 409 ProSitePatterns Zinc finger RanBP2-type signature. 370 389 IPR001876 -
Cati3g00301 409 SMART zf-4 368 392 IPR001876 -
Cati3g00301 409 SMART zf-4 334 358 IPR001876 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00301 K22685 DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:2427321 Cati9g00056 Cati-Chr9:240403 transposed