AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00327 ATATGATATTTTGATAGCTTAAGAAGGATATATATGATATTTGTAGATTAAGTTGGGTAAATATGATATTTTAATTTTACCAAGGGCATACATGAAATTAACCCTCCTGCTTTCTTCGATCTCCAGGTTAATCTGCATAGAGCGAGCTCAAACTCCCCTCCCATGCCTGCCATTACATTTTCTCCGGCGACTTCTTTTCCGTGTTGTTCTAGGAACAATGGAGCTCTCTCACCTACCAAACCACTGATGCCTAAATCGGCCAGATCTCAATCGGCGGGAAGGAAGAAGGTCACGTGCCAGGCATCAAGCATCCCCGCCGCCGACGACGGTGTTCCGGAGATCGGGAGGAGGAAGCTCATGAACTTGTTGCTAATCGGTGCCGTTGGTCTTCCCGCCGGCGCCATGTTGGTGCCTTACACAGCTCTCAGTTCAGGTACCTCCGGAGGTGGTATCGCTGCCAAGGATGAGCATGGAAACGATATCATCAAATCGCAATGGCTAAAAACCCATGAGCCTGGTGATAGAACCCTTATTCAAGGCTTAAAGGGAGAAGACCCCACGTATCTTATGGTCGAGAACGACAAAACTCTCGCAACTTATGGAATCAACGCGGTGTGCACCCATTTGGGGTGTATTGTACCATGGAACACGGTGGAGAAGAAGTTTGTGTGCCCGTGCCACGGTTCTCGGTACAATAGCGATGGGGAAGTCGTTGGCGGTCCTGCTCATCTGGCAACTCTGGTTCATACAAATATATATGACGATGAAAAAGTGGTGTTTGCTCCGTGGACGGAAACCGATTTCAGAACGGGCGGTGCTCCATGGTGGTCGTAG 834 48.68 MPAITFSPATSFPCCSRNNGALSPTKPLMPKSARSQSAGRKKVTCQASSIPAADDGVPEIGRRKLMNLLLIGAVGLPAGAMLVPYTALSSGTSGGGIAAKDEHGNDIIKSQWLKTHEPGDRTLIQGLKGEDPTYLMVENDKTLATYGINAVCTHLGCIVPWNTVEKKFVCPCHGSRYNSDGEVVGGPAHLATLVHTNIYDDEKVVFAPWTETDFRTGGAPWWS 223
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00327 223 Gene3D Single helix bin 45 86 - -
Cati3g00327 223 Pfam Rieske [2Fe-2S] domain 136 189 IPR017941 GO:0051537(InterPro)
Cati3g00327 223 SUPERFAMILY ISP domain 56 222 IPR036922 GO:0051537(InterPro)
Cati3g00327 223 CDD Rieske-cytochrome-b6f 97 223 - -
Cati3g00327 223 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 110 206 IPR017941 GO:0051537(InterPro)
Cati3g00327 223 MobiDBLite consensus disorder prediction 20 44 - -
Cati3g00327 223 PRINTS Rieske 2Fe-2S subunit signature 168 180 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Cati3g00327 223 PRINTS Rieske 2Fe-2S subunit signature 180 192 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Cati3g00327 223 PRINTS Rieske 2Fe-2S subunit signature 147 158 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Cati3g00327 223 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 33 211 IPR014349 GO:0005886(PANTHER)|GO:0016491(PANTHER)|GO:0051537(InterPro)
Cati3g00327 223 Gene3D - 87 223 IPR036922 GO:0051537(InterPro)
Cati3g00327 223 FunFam Cytochrome b6-f complex iron-sulfur subunit 88 223 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00327 K02636 cytochrome b6-f complex iron-sulfur subunit [EC:7.1.1.6]
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Event-related genes

Select Gene_1 Gene_2 Event_name
35518 Cati3g00327 Cati7g03354
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:2671538 Cati7g03354 Cati-Chr7:70698103 dispersed
Cati Cati-Chr3:2671538 Cati3g00327 Cati-Chr3:2671538 tandem