AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00328 TGATGAACACCAAAGGGTGAGACCCTACGGACCTCAAATCCAAATTAAATTACCTTCCGAATTCATCCAGTTGAAGTCCGCCATCGCCACCACCGGAAAACTTGAAATTCCGTCAACCGGAGATACTATCACGTTAATCTGTATGGTCTGAATTATCATAAGTAAGGCGGAACTCTGTTCGTAAGTTGCTACTTATGCCTACCTCCGACGACCACCGTCCTTCTCATTCAGCCGGAAAGCCGTGGCTACTGTGTCCGTTTTGGCAATCTGGAACAACAACTCCTTCATCATCAATGCAGAAGAATCTTCAATTTCAGAATCGGAAGAGCAACGAAATCGGCGTTAAATCAAACGGTGGATCTTCGAACAAGGTGTCGTCGGTGGCGAAATCGCTCCTACCGACTAGGAGAAGACTCCGGCTTGATCCAGCTAACAGCCTTTACTTTCCTTATGAGCCTGGTAAACAAGTGAAAAGTGCTGTCAGGATCAAGAACCATAGCAGTTCCCATGTTGCTTTTAAGTTTCAAACCACTGCGCCAAAGAGCTGTTATATGAGACCTCCTGGTGGTATTCTGGCTCCTGGGGAAAGTATAATTGCGACAGAAAAAAACGAAAAACAGTCGGATCAAAGGAGCAAGGTTAAGTTCAAGATCATGAGCCTCAAAGTCAAAGAAGGAATTGACTATGTGCCTGAATTGTTTGAGGAGCAAAAGGATGAAGTAGTTGTTGAGCGAATATTACGTGTTATTTTCTTGAATGCAGAGCGCCCTACCCCTGCATTGGAAAAACTAAAGTATCAACTGGCTGAAGCTGAGGCTGAATTAGAATTACGCAAAAAACCTCAAGTGGATACAAGTCCGAAAGTTGTTGGGCAAGGACTTATTATAGATGAATGGAAAGAACGAAGGGAGAAATACCTTGCTCGACAACAGGTCGAGGCTGTAGATTTGGTATGAGCAAGTTTCTCTTGTGTCATAATTTTTGTGACCGATACATTGGTCCCAACTCCACCACTTCGACTCGATCATGCACCACTTACGTTGGAATTGGTAGAGGTTTCACGGAGGTTCGTAGTAACGCTGGTCGATGCGTAAACATAAGCATTATATTTAGACGAGCATCGGTAAAATATGTCGTCCTCCTCGGGCCTTGCCTAGTAAAAATGATGAACCTTATTTTTTTCAATAAGTTCAAAATGTGTAACAATGTAATTCAATGCTTGAATAAATAACCTTTTCAACTTTTTCTGATTTTCATGTTGCCTTATTCATTATGAATAATGTAAGTGAACTTTTTTCATGTCAATTAT 1309 41.94 MPTSDDHRPSHSAGKPWLLCPFWQSGTTTPSSSMQKNLQFQNRKSNEIGVKSNGGSSNKVSSVAKSLLPTRRRLRLDPANSLYFPYEPGKQVKSAVRIKNHSSSHVAFKFQTTAPKSCYMRPPGGILAPGESIIATEKNEKQSDQRSKVKFKIMSLKVKEGIDYVPELFEEQKDEVVVERILRVIFLNAERPTPALEKLKYQLAEAEAELELRKKPQVDTSPKVVGQGLIIDEWKERREKYLARQQVEAVDLV 253
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00328 253 Gene3D Immunoglobulins 69 189 IPR013783 -
Cati3g00328 253 SUPERFAMILY PapD-like 62 196 IPR008962 -
Cati3g00328 253 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 73 243 IPR016763 GO:0005789(PANTHER)|GO:0005789(InterPro)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
Cati3g00328 253 Pfam MSP (Major sperm protein) domain 74 174 IPR000535 -
Cati3g00328 253 ProSiteProfiles Major sperm protein (MSP) domain profile. 73 187 IPR000535 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00328 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:2681843 Cati4g01648 Cati-Chr4:62023782 dispersed
Cati Cati-Chr3:2681843 Cati4g01647 Cati-Chr4:62023782 transposed