AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00334 TTTTCCATAACAAATTGACCCAAGAACACCATCAAAATGGCAATTAGCAACAAGAGTTTGATTTGCATGGTTTTGGCAACATTTGGTGTTTTGGGTGCAATTTCACAAGTAAAAGGCTATTCAAGCTCTTACTGTGGCCCCGCGTCTCGTTGCTCGCATCAAACCCTCTATTGCCCCTCCGAATGCCCCTCCAGCGAATCCAGCGATCCCGAGGCTAAGGTTTGCCGTATCGACTGCTACTCCCCTAAATGCAAGGCCGAATGCAAACACCGTAAACCAAACTGCAATAGCCCGGGATCGGCATGCTACGACCCACGTTTCATCGGTGGAGACGGCATCGTGTTCTATTTCCACGGCAAGGTCAACCAGCACTTCAGCTTAATCTCCGACTCCAACCTCCAAATCAACGGTCGTTTCATCGGCCACCGACCCACGGGCCGGACCCGCGACTTCACCTGGATCCAAGCATTGGGCCTCCTCTTCAACTCCCACACCTTCTCACTAGAAGCCACCCGATCCGCCACGTGGGACTCCGAAATCGACCACCTCAGGATCACCTACGACGGAGAACGGATCTCGTTGCCGATGGGCGGCCTGTCCACGTGGGAGTCACGTGAGGACGGGATCAAAGTGGAGAGAACCTCCGGGGTGAACAGCGTGATGGTGAGCCTGCCGGGAGTGGTGGAGATCTTGGCGAATGTGGTGCCGGTCACCTCGGAAGACGACAGGATCCACGGGTACAAGGTGCCGTCCGATGACTGCTTTGCGCATTTGGAGGTTCAGTTTAGGTTTTCGGGGCTTTCGGACGAGGTGGAAGGGGTGTTGGGAAGGACGTATCGGCCGGATTTCGAGAATCCCGCGAAGCCAGGCGTCGCGATGGCGGTGGTCGGAGGAGAAGACCGGTACAGGACCACCGATCTGTTGGCGGCGGATTGCGCCACGTGCATCTTCGATTCGAGCAAAGGGGAGCAGAAGAAGATGGTGAAGGAGTATGGAACCTTGGATTGCTCTGCCAAGGGATTGTTCCATGGAAATGGGATTGTTTGCAAGAAGTGATCAAAAGATGAAATTTAAAGAGAATATATATCATATCGAAATAAAATCGTTATAAATGATCAATAAATCGATAGATTGAGATTCAATCTGTTAAAATACAGTTGAAAATTCCATCTTGTTATACATTTTGTTGCAACATTCTACCAAATATATATATTAATGTGTTATGAAAAAGAAT 1234 50.24 MAISNKSLICMVLATFGVLGAISQVKGYSSSYCGPASRCSHQTLYCPSECPSSESSDPEAKVCRIDCYSPKCKAECKHRKPNCNSPGSACYDPRFIGGDGIVFYFHGKVNQHFSLISDSNLQINGRFIGHRPTGRTRDFTWIQALGLLFNSHTFSLEATRSATWDSEIDHLRITYDGERISLPMGGLSTWESREDGIKVERTSGVNSVMVSLPGVVEILANVVPVTSEDDRIHGYKVPSDDCFAHLEVQFRFSGLSDEVEGVLGRTYRPDFENPAKPGVAMAVVGGEDRYRTTDLLAADCATCIFDSSKGEQKKMVKEYGTLDCSAKGLFHGNGIVCKK 339
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00334 339 Pfam Root cap 249 305 IPR009646 -
Cati3g00334 339 PANTHER ROOT CAP DOMAIN-CONTAINING PROTEIN 32 339 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00334 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:2695425 Cati3g00334 Cati-Chr3:2744875 dispersed
Cati Cati-Chr3:2744875 Cati4g01708 Cati-Chr4:64168011 dispersed
Cati Cati-Chr3:2744875 Cati3g00334 Cati-Chr3:2744875 tandem
Cati Cati-Chr3:2744875 Cati3g00335 Cati-Chr3:2744875 tandem