AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00345 AATTCACGTTAGCAGTCGGTTTTCTGCAAAACAAAAAAGAACCCTAATTTTTTTCCCCCTTTCAACGTTTCAAAAAGGATGATAACAGCGATTCAACTTCCGAACACAAACGAAAATCGACGGATGTGATTTTTTCATGGTAGTTTTAGCGTTTTCACAATTGCACACATGGTGTTTGATGATATGTCTGAGAGAAGTAAAATTTAGTATTTGATGTCAATTGCTAATTTTTGAGGGAGAAATTGTTTTTTTGATCAATTTATGAGGATTCAGTACTTGTATTTTTGAGTTTGGATTAAGGGAAGGGAGAAGAGGTAGGGATGGAGACCCCAGTTTCGGATGCTAGGGTATCGAAGAGGTTGTTGAGAAAGAAATCCCTATCTAGAAGCTATGATGAGAATTTGATGGATGACTATTTGGATAAACAACTAGGTGGTTCCGTTAGGAAAAGGTTTAGAACAAAAAAGGAATTGGAGAAAGAAACTGAGAAAGAAGCCATGATAGCCCTTTCTTTAGGGTTTCCGATAGATGCGTTGCTTGACGAAGAGATTGAAGCTAACGTAGTGGGTGAATTGGATGGAAAAGAGCAGAATGATTATATCGTGGTGAGAAACCATATACTTTCAAGGTGGAGGGCTAATGTACATGCATGGCTTTCTAAAGGGCAGATAAAAGAAACTGTAAGTAATGAATACGACCACTTGTTGCATTCGGCTTATGATTTTCTTTTGTTTAATGGGTATATAAATTTTGGAGTTTCGCCATCATTCAAGGCTCAGATGCCCGAGGAAGCAACTGAGGGATCTGTGATAATTGTGGGTGCAGGACTTGCTGGGTTAGCCGCGGCCCGCCAGCTGCTAGCTTTTGGTTTTAAGGTCATTGTTTTGGAAGGTAGGAACCGACCTGGTGGACGGGTTTATACCCAAAAGATGGGTCAAAAGGGTAATTATGCTGCAGTTGATCTTGGTGGAAGTGTTATCACGGGCATCCATGCGAACCCACTAGGAGTTTTGGCTAGACAGCTTTCGATTCCTCTTCATAAAGTTAGAGATAAATGTCCGTTGTACAATCACGAAGGGCAACCGGTTGCTAAGGAAGTTGATTCCAAAGTAGAATTTATATTTAACAGGCTTCTAGACAAAGTTACCGAATTTAGACAAATTATGGGTGAAAACGCTGCTGATGATATTTCTCTGGGCTCGGTTCTTGAGAAGCTTAGACAGTTATATGCCGTGGCTACAAGTACTGAGGAAAAACAGTTACTCGATTGGCATTTTGCAAACTTAGAATATGCAAATGCAGGCTGCCTTTCACATCTCTCTGCTGCTTATTGGGATCAAGATGATCCGTACGAGATGGGTGGTGATCATTGCTTTCTTGCGGGTGGGAATTGGAGGTTAATTGAAGCATTGTGTGATGGGGTTCCCATTTTCTACGAAAAGATTGTCCAAACAATTAGATACAATAATGATGGTGTTGAGGTGATTGCAGGGGATCAAACGTACCAAGCAGACATGGTCTTATGCACCGTTCCTCTTGGTGTTCTAAAGAAAAAGACCATAAAGTTCATACCAGAGTTACCCGAAAGAAAACTCGATGCAATTGGGAAACTGGGATTCGGGCTGCTGAATAAGGTTGCGATGGTATTCCCGAATGTCTTTTGGGGGGAGGATCTGGATACATTTGGCTGTCTTAGCAAGGATAGCAGTACCCGTGGAGAGTTCTTCTTGTTCTACAGTTATCATACTGTTTCCGGTGGATCAGTTCTTGTTGCATTAGTTGCTGGTGAAGCTGCAAGATCGTTTGAACACACACATCCGTCAACTTTGCTTCATCGTGTTTTAACCATTCTCAGAGGTATATATGGTCCAAAGGGTATCGATGTACCTAATCCCATCCAATCTATTTGTACAAAATGGGGAAATGATCCCTTTTCTTATGGTTCATACTCTCATGTAAGGGTGCACTCTTCTGGTAGTGATTATGATATCCTTGCAGAAAATGTGGAAAACCGGCTTTTCTTTGCTGGTGAAGCCACAACCCGCCAACATCCAGCCACCATGCACGGTGCTTACTTAAGTGGCTTAAGAGAAGCTTCATGCATTTATCGAGTCACAAGGGGTAAGCAAACTCAAACTTATCCTAAGAAGAACATTCGAAAAATTGGTGGAGTGAGTGATATTCTCATAAATCTTTTCAAGAAGCCGGATTTAGCTTTTGGGAACTTTCTTTTTGTATTTGACCCTTCAACCGACGACCTTAAATCAGCTGGGCTTATGATGGTTGCTATCGATAGTTCCAATAGCGAGTTGTCTAACGATAATGGGAAGGTCAACGTTAGCCAACATCCCGACAGACAACCCATGAGGCTTTATACGATTGTATCGCGTGTACAGGCACAAGAGTTGCAATCCATGGTCGGAGGTGGTGAGTGTGGAATGACGTATTTGTCCAAAAATCTCGGGTTGAAACTAATGGGAACGGATTCTTTTACCCTTTTAGCCAATTCCTTGATTTCGTACATTGCTACACGAAGAGTTGATACCTTGTATCCAGAGTTCAGGGCGGTGGATAATCTTGTGGCACGCAATACATCTCGAGTTCTAAAAGCTTTTCAGAATGCCAGGGTCGGATCTCATCACTTCAGTGGTTGCACTGGCTATGGCCATGAAGAAGCTGGGGGTCGTGAGGCCCTTGACCAAGCCTTTGCTGAAATTTTTGGTGCTGAATCTGCAATCGTTCGATCACATCTTTTGGCAGTTGCCGGTGCTCCTTATGATACACTGGAGGAGGTTATAGGAATCAGGGACGGAAATGGATCTGGTTCCTTGAAAGATTTCGGAATCAAGTATCGAGAAGTTGCACTCGCAGATGATGGAGGACTTGATTGGGATGCTCTCAAGGTCGCTCTGAGACCTCAAACCAAGTGTGCCCTCATACAAAGATCATGTGGGTACTCTTGGCGACGAAGTTTAAGTGGTGCAGATCTTATTGCAGGAAGTTTAATTAAAAATCCAGGTGGAACGATCGCACCCTGTGGTGGATACGTTGCAGGTAAAGAAAAATGGGTAAAAGCAGCAGCAGCCCGTCTCTCGGCACCAGGCCTTGGGGTCGATTGCGGCTCGACTCCCGGTGACATTATGCGGACGTTCTTTCAGGGATTATACCTCTCACCTCAAATGGTTGGGGAAGCAATAAAGGGAGGCTTATTGATCGCTGAAGTTATGTCCACAAAAGGTTACAAGGTCCAGCCACTTCCACGAGCGGTACAACTTGGAACCCGTGAGAGGCTACTTGCTTTCTGCGAAGCTGTACAAAGAAGCTCCCCGGTAAGCTCTTATACCAAACCGATTGCAGGTTCAACACCTGGGTATGCATCGGAGGTGATCTTTGCTGATGGCACATTCATAGATGGCAGCACAAGTGAGCTCTCGTGCGATGGACCGTTAAGGGAGCCGTTCTGCGTTTTTTGTCAGGGTGGTACTCATTGGACTCAATGGGGATTAGTTCTAGGCGAAGTTTTGAAGTCCTTGTAGAATCGGTGCAAAGATTACGAAAACAAGAGGAGAGAGTTTGTTTGGCAAGATACTTCTTCGAGTGTTCGAAGAAATATTTTACCATATTCGACATTTTATAATTCTTAGGCTGCCAGACGCAGGCCGGTCCAGACTTCCATTTGGACCATGTTGATCAGACCGGATATTTTAGACCGGTCTGTGCCCACCTTTATTGGCACACCTTTATTTGTATTACTTCAGTGTATATGATATTTGTATATTAATTTTTGAATGTTTGGTTTTCGATGATTTTGATATTTAAGTCTGG 3825 43.11 METPVSDARVSKRLLRKKSLSRSYDENLMDDYLDKQLGGSVRKRFRTKKELEKETEKEAMIALSLGFPIDALLDEEIEANVVGELDGKEQNDYIVVRNHILSRWRANVHAWLSKGQIKETVSNEYDHLLHSAYDFLLFNGYINFGVSPSFKAQMPEEATEGSVIIVGAGLAGLAAARQLLAFGFKVIVLEGRNRPGGRVYTQKMGQKGNYAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDKCPLYNHEGQPVAKEVDSKVEFIFNRLLDKVTEFRQIMGENAADDISLGSVLEKLRQLYAVATSTEEKQLLDWHFANLEYANAGCLSHLSAAYWDQDDPYEMGGDHCFLAGGNWRLIEALCDGVPIFYEKIVQTIRYNNDGVEVIAGDQTYQADMVLCTVPLGVLKKKTIKFIPELPERKLDAIGKLGFGLLNKVAMVFPNVFWGEDLDTFGCLSKDSSTRGEFFLFYSYHTVSGGSVLVALVAGEAARSFEHTHPSTLLHRVLTILRGIYGPKGIDVPNPIQSICTKWGNDPFSYGSYSHVRVHSSGSDYDILAENVENRLFFAGEATTRQHPATMHGAYLSGLREASCIYRVTRGKQTQTYPKKNIRKIGGVSDILINLFKKPDLAFGNFLFVFDPSTDDLKSAGLMMVAIDSSNSELSNDNGKVNVSQHPDRQPMRLYTIVSRVQAQELQSMVGGGECGMTYLSKNLGLKLMGTDSFTLLANSLISYIATRRVDTLYPEFRAVDNLVARNTSRVLKAFQNARVGSHHFSGCTGYGHEEAGGREALDQAFAEIFGAESAIVRSHLLAVAGAPYDTLEEVIGIRDGNGSGSLKDFGIKYREVALADDGGLDWDALKVALRPQTKCALIQRSCGYSWRRSLSGADLIAGSLIKNPGGTIAPCGGYVAGKEKWVKAAAARLSAPGLGVDCGSTPGDIMRTFFQGLYLSPQMVGEAIKGGLLIAEVMSTKGYKVQPLPRAVQLGTRERLLAFCEAVQRSSPVSSYTKPIAGSTPGYASEVIFADGTFIDGSTSELSCDGPLREPFCVFCQGGTHWTQWGLVLGEVLKSL 1071
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00345 1071 Gene3D - 58 156 IPR036388 -
Cati3g00345 1071 SUPERFAMILY Homeodomain-like 54 155 IPR009057 -
Cati3g00345 1071 Gene3D - 729 783 - -
Cati3g00345 1071 PANTHER CYS OR MET METABOLISM PYRIDOXAL-PHOSPHATE-DEPENDENT ENZYME 887 1071 IPR009651 -
Cati3g00345 1071 SUPERFAMILY FAD-linked reductases, C-terminal domain 432 544 - -
Cati3g00345 1071 Gene3D - 934 1071 - -
Cati3g00345 1071 Pfam Methionine gamma-lyase 887 1069 IPR009651 -
Cati3g00345 1071 Pfam Methionine gamma-lyase 740 885 IPR009651 -
Cati3g00345 1071 SUPERFAMILY FAD-NAD(P)-binding domain 159 597 IPR036188 -
Cati3g00345 1071 SUPERFAMILY PLP-dependent transferases 759 1043 IPR015424 -
Cati3g00345 1071 Gene3D - 163 593 IPR036188 -
Cati3g00345 1071 FunFam Lysine-specific histone demethylase 1A 57 157 - -
Cati3g00345 1071 Pfam SWIRM domain 76 144 IPR007526 GO:0005515(InterPro)
Cati3g00345 1071 Pfam Flavin containing amine oxidoreductase 170 595 IPR002937 GO:0016491(InterPro)
Cati3g00345 1071 Gene3D - 245 551 - -
Cati3g00345 1071 ProSiteProfiles SWIRM domain profile. 52 153 IPR007526 GO:0005515(InterPro)
Cati3g00345 1071 Gene3D - 886 933 IPR015421 -
Cati3g00345 1071 Gene3D - 784 885 IPR015421 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00345 K11450 [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase [EC:1.14.99.66]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:2831892 Cati3g00345 Cati-Chr3:2831892 dispersed
Cati Cati-Chr3:2831892 Cati9g01057 Cati-Chr9:9287817 dispersed
Cati Cati-Chr3:2831892 Cati3g00345 Cati-Chr3:2831892 tandem
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cati Amino_oxidase 1.1e-83 CL0063 TR SWI/SNF-SWI3