AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00389 AATCATATTCCCATATCTCCTTTTCTGCCCCTCTCTCTCCCCCCTCCTCTTCTCTCACTCCTTTTTTCTTGCTTTTACTGTCTCTTTTCTCACTCTACTGGTTCCCCCTTTCTCTCTCATCACCAAACCCTCTTTCTCTCTCTAGAACTTGAACCCAAAACTCACACAAATGAGAGGACCCTTAGGTTCAGTGATTGGCAAATACCCATCAAGTGATGGAAATGGTGAACTTGGTGGTGGAAATGGAATCATAAAACTCAACAGAAAATGCAGAGATATTGTGTTTCTTGTTTTCTTCATAGCTTTCTGGATCGCCATGATTGTTAACTCAAGCTTTGGATTCAACCAAGGAAACCCATTAAGGCTAAACTTCGGGTTGGATTATAAAGGAAACGTATGTGGGGGCAAACACAAAGATTTCGACCTCCGACAATTGGAGCTCAAATATTATGTTAATCCTAACCAAGTTTACCAAAGTGGATTGAAGAATAGCCAAGTGAAACTATCCAATGCTCGGACCATATGCTTGTTAGATTGTCCCATACCATCGGGAGATTCTCTGAATTGGGTTTGTGATTACCCTGAGGGAGATCTTCGCCTTTCTTTAGACGATTGGATCGATATGAACTATGACTACTTTGCGGATCTTACTCCTGAGCTAAGGAATACTTCCCTGCAACTTCAAGGCCCTTGTTACCCTGTTATTTTTCCAAGCGTAAACGTTTATTGGAGTTGCCAATTTCTTGCACGCCCGTCGAATGTGTCTTTGACACATTGGAAGCAAATGAATGGGGTTACGATTGCCGATGATATGGTTATAGATAAAGCCATTCACAAGTCCATTAACTCAAGGTCCTCGGTGTTGAAGGTCTCACCTCTGAGTGGGATAATTGGGTCTTTTTCGTTTGAGATACGTGGCCGATGTTGGAAAGTCATGGCCCGTGTTGCTTGTTTGCGGAGGATTCCTACCTCTATTTCTCTCACTACTATGGCTTTTGATGATCCGGCATTTCGTAACCGGGATGCCATGGGTTACCGTCGTTCTCTTCAATGGCCTCATAATATCGCTGGATGGATCGGAAACGATGCTATCTCACCCATCATCGGTGAACACGATCCATACTATCATGTTTCCGCAAGGGAGGAACATCATATCCGTGCAGCCGCTTTTCTCATGACGTGTGTGATGATTGTTGCCGTTCTATCGTCTATAGCTATTGTTCGTCGGATTCTTATGGCAACCTCGGTTGCTGCAAAGGTCATCGGTGAGGTTCAGGCTCTCATAATATTTCCGGTGATTCCATACGTAATCCTTGCAATCTTTTACATGTTCTGGTTGTCGGCCGCCCTCCATCTTTTCAGTTCCGGCCAGATCGTGCAAAATGATTGCAACACAAACTGCTGCGCGTATGATCTCAAAGCCAAACGCGTCAGTTGTGACGATTGCTGCGGCTATAGCATTCGTTACACCTCTCATATCGCAGCTTCGATCTTGTTCCACCTGTTTGGATGCTATTGGGCTACTCAGTTTATCATAGCGTGCTCTTCGACCGTGATTGCTGGCTCCGTTGCTTCCTACTACTGGGCTCGTGGGGAAACTTCGGCAGCGATTCCGTTTCTTCCGGTTTTCTCCTCGATGAAGCTACTCACGCGCTACAGCCTTGGCTCGGTGGCAATCGGATCGTTGATTGTGTCGTTTGTCGAGTCGACTCGGTTCATACTTGAGGCCATACGTCGCAGGTTGAAAGTTGCTGATATTCTGCCTGAAAGCTGGATTAAGAGGATGATGTTCTATACTTCTCGGTTTTGCTTGAAGTGTATCGAGTTGACCATAAAATCCGTAAACCGCAATGCATACATTATGATTGCAATAACGGGCAAAGGGTTTTTTCGGGCTTCTGAGATGGCAACGGACTTGATCATTAGTAACATTCTTCGTATAGGCCGAGTGAATGTGATCGGAGACGTGATTCTCTTTCTTGGAAAGCTTTGTGTGAGCCTTGCAAGTGCACTTTTCGGTTTCCTCATGTTGGACACTCACAAATACAAATCGTCGCACAACAAGATCACATCGCCGCTATTTCCTGTGCTGGTGTGTTGGGGTTTGGGATACATAGTGGCTACACTGTTCTTTGCGGTGGTGGAAATGTCGATCGATACGATCATCCTTTCGTATTGCCAAGATGCAGAGGAGCACCAAGGAACTGCACACTATGCTCCTCCACTTTTGATTGAAACCTTTGATGAACAAAATGAGGTCCAAAGAATTGGACAATGATGGAATGTAGTGTTAATTAGTAGCATCTTTCTCTAGTAACTTATGTGCAGCAACAAAAGAGCATTATGATATATATACTTACATATATATGTGGCCAAGTTTTGAATGAATGAATGGTTGAAGTTTCTT 2407 44.29 MRGPLGSVIGKYPSSDGNGELGGGNGIIKLNRKCRDIVFLVFFIAFWIAMIVNSSFGFNQGNPLRLNFGLDYKGNVCGGKHKDFDLRQLELKYYVNPNQVYQSGLKNSQVKLSNARTICLLDCPIPSGDSLNWVCDYPEGDLRLSLDDWIDMNYDYFADLTPELRNTSLQLQGPCYPVIFPSVNVYWSCQFLARPSNVSLTHWKQMNGVTIADDMVIDKAIHKSINSRSSVLKVSPLSGIIGSFSFEIRGRCWKVMARVACLRRIPTSISLTTMAFDDPAFRNRDAMGYRRSLQWPHNIAGWIGNDAISPIIGEHDPYYHVSAREEHHIRAAAFLMTCVMIVAVLSSIAIVRRILMATSVAAKVIGEVQALIIFPVIPYVILAIFYMFWLSAALHLFSSGQIVQNDCNTNCCAYDLKAKRVSCDDCCGYSIRYTSHIAASILFHLFGCYWATQFIIACSSTVIAGSVASYYWARGETSAAIPFLPVFSSMKLLTRYSLGSVAIGSLIVSFVESTRFILEAIRRRLKVADILPESWIKRMMFYTSRFCLKCIELTIKSVNRNAYIMIAITGKGFFRASEMATDLIISNILRIGRVNVIGDVILFLGKLCVSLASALFGFLMLDTHKYKSSHNKITSPLFPVLVCWGLGYIVATLFFAVVEMSIDTIILSYCQDAEEHQGTAHYAPPLLIETFDEQNEVQRIGQ 702
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00389 702 Pfam Plasma-membrane choline transporter 335 674 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Cati3g00389 702 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 27 695 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00389 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr1:83194004 Cati3g00389 Cati-Chr3:3234211 dispersed