AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00411 AGAAAAAGCGAAGCGGTGGGTTTTTGGATTATTTTGCAAGAAACACACACACACACACACACCATCGATACTGATCCAAGCTACTACTCGTAGTATGTCGGCAATGGAGGTGGATTACTCTTTTGATGCTTCGAAGCTTCTTCAAGCGGCTTCCGACTTCTCCTTTGATCCTGGAACTCGATCAGAAGCTGCTGTGAAGGAGTTTCTTAGCTCTTTTCCCCTTCCTGTTATCATCAATGCGCTGCAAACCAAAGGAGATATGCCTGGTTTGGAGGATGCGTTGATTGATTGTCTAGAGAAGATATTTAGAACAAAATATGGGGCCTCCCTCATCCCAGAATACATGCCTTTCATTGTGGTTGGCCTGCAAGCATATTCTCAGAGAGTCAGAAGTTTGGCTTGTAAAACGATCTCTAGCCTTTTGGAGAATCTTGAAGATAGTGGTTTAGCTACTTCACTGATAAAAGAGAATGGCGTGTACCCGCTTCTGCTCAATTGCCTCATCGATGGTGATGAACAAGTGGCTGTTGCCGCAACAGATGCAATCAGGGATATAGCAGCCTCTCAACAGGGAATTGAAATCATATTCCCAGCTACTCCCACTGAAACTACTGATATTACAAAGCTAGCAGCAAGATGTTCATCACTGGGACGAGCACGTGTTTTGGCATTGATAGTGAAGCTATTTTCTACCTCCAGTGCAGTTGCATCATTAGTTTACAACTCAAATCTCCTTGGTCTCTTGGAGGCAGAAGTTCGCAATACTAAAGATACACTCATGACCTTGAGCATTTTGGAGCTCCTTTACGAGTTGGCTGAGGTCCAGCATGGAATGGAATACGTGCTGCGGACCAATATCTTGCAGTTACTTATTTCTATAATCAGAAATTCTTCTGCTGAATCGATGTTGAGGTCAAGAGCAATGATGATAAGCGGTCGGCTTTTATCAAAGGAGAATGTTCTCATGTTTATAGATGAATCCAGTATTAAAGCTGTGATTTCAGCCATTGATGAAAGGCTTTCATTGCTAGACAATCAAGATGCAGATGAATGTGAATGTGGTCTTGAAGCAATGGGTCAAATAGGTTCATCAACCCGGGGAGCTATCTTGCTACTGTCAGACACATCTGCTGCTAGACATGTTGTTAGCGCTGCCTTTGATCTGCATGGCCGTGGCAAACAACTGGCTGCCTTGCATTCTCTTGGGAACATTGTCGGAGAAACTCGGCCTGAGAACAACAAACTGCTGAATGCTGATGCTGAAGAAAACCTGCGTAGATTAATCTATGGAACAGCATCCAACACTCCGAAGCTCATACCATCGGGTCTTGTTCTTGCCATTCTTAAACTTGAGTCTGAATTTCGGATTGCGGGTTATAGGTTGGTAGCAGGATTGGCTGCTAGACCATGGTTCTTGGTCGAGATCTGCTCCAGACAAGAGATAATAAATATAGTGACAGATCCGGTTACAGAAACAACTAAAATAGGCATGGAGGCCAGATACAACTGTTGTGAGGCGATCTATAAGGCTCTTGCATCATCGCCCAAATTTCTGAATGATCCAGCTCTTTCTGGGACGGCTGAAAAGCTGGTGGAAGCTATCCGAAAGGGTCCTTATCTAGCAAAAGGACGACAACGTGAAGCTCAACCTGAAGTTGCGACTGCCGACAGATTTTAGGGTTCCTGAAGTTGCAAAATGGGTGATGTTACGATGTTCATGTACAAATCAAGTGTCGGGTATTTTCACCTTTCCGCCTTTAAACTGGAAGAGGTGATATTATGCCGGATGTTTTGCATTTCTGTAACGGACGTAAAGTATTGTAGTTTAACGACCTTGAATTCGTTTCATTGGTTGTAAGAAATAGTAATCTTCTCCCATCTCTTTCTGGAACCGAGTGTTGTGGCATAAGGACTAGATAAGATTATGCAGTTGTCTTTTTGAGCTCTACCTTTGCTTGAGAAAGTTTTGAGCTCAATTTGGAAGTTTTGAAAATATAAGCTTGATTCAAGAGTTTAACAAGATCAGATCTATCACAACTCACAAGCTTGATTTGAGTTTTACTTGAAAAAGCATTAAGCCAAAATGACTATATGGAATAAGCTATGACCTCCCTCGCTTGTTTCCATTAAGCTACTTCAGAAAAATAAA 2149 42.53 MSAMEVDYSFDASKLLQAASDFSFDPGTRSEAAVKEFLSSFPLPVIINALQTKGDMPGLEDALIDCLEKIFRTKYGASLIPEYMPFIVVGLQAYSQRVRSLACKTISSLLENLEDSGLATSLIKENGVYPLLLNCLIDGDEQVAVAATDAIRDIAASQQGIEIIFPATPTETTDITKLAARCSSLGRARVLALIVKLFSTSSAVASLVYNSNLLGLLEAEVRNTKDTLMTLSILELLYELAEVQHGMEYVLRTNILQLLISIIRNSSAESMLRSRAMMISGRLLSKENVLMFIDESSIKAVISAIDERLSLLDNQDADECECGLEAMGQIGSSTRGAILLLSDTSAARHVVSAAFDLHGRGKQLAALHSLGNIVGETRPENNKLLNADAEENLRRLIYGTASNTPKLIPSGLVLAILKLESEFRIAGYRLVAGLAARPWFLVEICSRQEIINIVTDPVTETTKIGMEARYNCCEAIYKALASSPKFLNDPALSGTAEKLVEAIRKGPYLAKGRQREAQPEVATADRF 527
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00411 527 SUPERFAMILY ARM repeat 41 504 IPR016024 -
Cati3g00411 527 Pfam Proteasome non-ATPase 26S subunit 67 513 IPR019538 GO:0043248(InterPro)
Cati3g00411 527 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 5-RELATED 8 527 IPR019538 GO:0005829(PANTHER)|GO:0043248(InterPro)
Cati3g00411 527 Gene3D - 11 406 IPR011989 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00411 K06692 26S proteasome non-ATPase regulatory subunit 5
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:3423337 Cati3g00681 Cati-Chr3:7448892 dispersed