AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00430 TCGCCCCTGGAGGTCCTGACCCTCATCATCATCTCTAAAAGTTACTCGAGAAAACCCCCAATTTCCATCGGAAGGCGCGTCTAGAAAAAACATAAAAACGGCAATAAGCAAGGCGCTTACGTTGTTTGTATAAAGGAGAGTGGAGCAGCTTTGGTCCAGACGCAAACCCAAGCGCGTGTTTATCAACATGAAAGCGAGCAGACTTCGGATCGATTTGCTCTCCCCCTTCTGAATCGTTGTTTGAATTTTTAGATTAGGTATAGAGATCATCATCATCATCATCATACGCGCTGAAAACCCTAGTTCCGTACGGTTTTTGATCTCTGTTTTTCCTCCGATTTGAAGGCTTTCAGCCCCAGATCTGATGCTAGGGTTCGATTTTTCGAAATTCTAGGGCTTGAATTCTAGGGTTTCGTATTCCATGTTTTGATTTATCGTGATACCGTGTGTTGGTCGTTTGAAAACCTAGGTTTTCATCGAAGAAATTCGATTTCTTCCTTTTTCTTTTGGGGAAATCGGATAAAAAGTTTCGATTTTGGTGGATTTGGGGGTGTTCGTATATGTATGGCTTCAGGGATATTATTAGATGCGGACAAGATAAGCAAAGGGAAGAGTAAGTGGGGAGAGGGTAATAAAGTATACACGAGAAGGTTTAAAAAAGCCAATAAGAACACCACCACCACCGCCGCCCCCGCCCCCGCCACCGCTTCCTCCCCAACCACCACCGTCACCACCACCTCTCCGCCTACCACCGCCACCGCCAACCCGCCTTCGCCACCCGCCGCTGCAAACAACGACCAAACCCTAGCCACCGAGGACGCAAATTCGGAAAGGCAATTATCGCCGGTGCTCGAGGTATCGGATGATCATTCCATCCAAAATCGGCAGCTTGAAGCGGTTGCCGTTTCCCCGAACGGGCCCACCGGGAACGGGGTGATAAAACCGGTTGCGGTTGTGGTGGACGGTCGGGTGAAGATTAATATAAAAGCCGCGAGGTCGAAGAATGAGATTGTTGAGCTTAGGGAGAAGCTAGGAGCTGAGCTCGATCGGGTCCGGCGTGTGACTCAAAAGCTTGAAGATAAAGAAGCCGAGCTAACCGCGTTTTCAACTGTTCTTGGTGTTGCTGGCGACGGTGAGGCTTACAGCCATTCGCAGTATTCCGGCAATGATATAGTGGAGAGGAGAGCTCTGCTTAGAGTGAATTCGGAAATGGGTACTGATTTCATGGACAGGAGGGCTTTAGCAAGAGTTGATCGGGAAATGGGATCGGATGTGATAGACCGGAGAGCGTTGATGAGACTGAATTCTGAAGTGGGTTCGGTGGCAAATAGTGACATAAGGCCTTTTAGGCCGCTAAGTGTATCGGTTGTTGATAACAGCCATGGGGTTGGTGAATTTGTCGAGAAAGAGAAGAGGACACCAAAGGCTAATCAGTATTATCGGAACTCGGATTTTCTTCTCGGGAAGGACAGGTTACCTCCCGAGAGCAACAAGAGGCACAAGGTTAACGGTGGAAGAAAGCATAGCAAGGATTCGGATTACAGTGTTGGTCATGAAAGGCACCGGACTCAAATGTTCAAGAGTTGCAGCAATTTGCTGCAGAGATTGATGAAGCACAAGCACGGTTGGGTGTTTAACGAACCTGTTAATGCGAAACTGCTTGGGCTGCATGATTACCATGACATCATTAAACACCCGATGGATTTGGGCACGATTAAGAGCCGTCTTGCGCAAAACTTCTACAAGTCTCCCCAAGAGTTTGCGGACGATGTCAGGCTCACGTTTCATAATGCCATGACTTATAATCCAAAAGGGCAAGATGTACATGTTATGGCAGAGCAGCTATCGAATATCTTTGAAGAGAGGTGGCCAGTGATTGAATCTGAATCCAATCCAGATTGGAGGTATGGAATGATTTATGATGCAAGCACTCCAACTCCCACTTCAAGAAAGGTTCCTCATTTTGCACACGCCCCTCCGAGGACACTGTATAGGTCGGAGTCCATGACCTTGCCTTTCATGACTAGGCAAAAACCTTCGAAATTTGCCCCACCTAGCAGGACACCCATGCCAAAGAAACCTAAAGCCAAGGATCCCAATAAGAGGAATATGACTTATGAAGAGAAGCAAAAACTTAGCACAAACCTTCAAAGCCTACCTTCTGAAAAGCTCGACAACATTGTCCAGATCATCAAAAAGAAGAACACCTCACTTTCTCAACACGACGATGAAATCGAAGTTGATATCGATAGTGTTGATATAGAAACTCTCTGGGAACTCGACAGGTTTGTCACAAATTACAAGAAGAGTTTAAGCAAGCATAAAAGGAAAGCTGAACTTGCTCAACAAGCAAGGGTGGGAGCCGGCAATGCTAATCAGCCTATGTTAGAAAACCTGGCAACATCCCTTCAGCAGGCCCCAAAAGAAAATAAAGCAAATGAGAAGACTCTTGCCAGTACTCTTCCCGAGCAGGGACAGAGGAGAGGAGATAATGCCAGTAGGTCTAGTAGTTCAAGCAGTTCTAGCAGCGACTCTGGATCCTCTTCAAGCGATTCAGATAGTGATAGTTCCTCTGAAGATGGATCGGATGCGGGTCATTCACCTAGAAGTTGAATGGCATAGATTAAGTTTGTTGCAGATTTTCATCAACTGACGGTCTCCTAACAAGAATGTTTGAGCGATGGCCGACCAACCACATGATGAGCTGGTAATGCTACACTGCTACCTCTGAAAAGGTGTTTGATGTTGATTTTGTAATTAAAGATGGTGGCTTTTAATTAGAAAGTAGGGTGTATGATATTAAAAAAAAAAAGATTGGTTGTGGTTGTGGTTGTGGCTGTGTAGCAAAATGTAAAAATTGGCTACACATTTTAGGTTAATGTGGTAGGGGGCAACAACAGAATGCAGTCAGATTGTTTTGAGGTGGACTTGGAACCACAAAATGCCATATTCTTGATGATGGATGGGGTGGTTGCATTTTTTTGTATCGGTCATAAAATATCGAATGAAAATGAAAAACTGTAGGTGTTAGCGTGCAGCCGTATATAAGTCCCTTCGTTTTTGTCATGTATCTTTGTTCCTTAAATACTGTATGTAATGTTTCAGTTGCTAAAGCTGTCTGTTTTCCATTTGAGTGTGGAGGGAAAGTGAAAATGGTAGGAGACCCAACATCAAAAAGTTCCATTTTCCACAAATATTCTTGGAAAAAAAAGGTTTACATAAAGACTTTGGTTCAATAGGGGGTTACAATTCGGTTGGATTGGATTGGACTGGAGACTGGACCGAGGTAGGTGAAATAATTATGCAAGGTGTGATGTTTTAATCTGATATGGGTAGTTTAGTAATTTACCTATCATATCGTTATCTTTCTTTTTTGGTTTTGTCCTATACTAGTCTAATGTTCCCCGAAACATGGGGCAAGTTTTGGTTATGTCT 3435 44.6 MASGILLDADKISKGKSKWGEGNKVYTRRFKKANKNTTTTAAPAPATASSPTTTVTTTSPPTTATANPPSPPAAANNDQTLATEDANSERQLSPVLEVSDDHSIQNRQLEAVAVSPNGPTGNGVIKPVAVVVDGRVKINIKAARSKNEIVELREKLGAELDRVRRVTQKLEDKEAELTAFSTVLGVAGDGEAYSHSQYSGNDIVERRALLRVNSEMGTDFMDRRALARVDREMGSDVIDRRALMRLNSEVGSVANSDIRPFRPLSVSVVDNSHGVGEFVEKEKRTPKANQYYRNSDFLLGKDRLPPESNKRHKVNGGRKHSKDSDYSVGHERHRTQMFKSCSNLLQRLMKHKHGWVFNEPVNAKLLGLHDYHDIIKHPMDLGTIKSRLAQNFYKSPQEFADDVRLTFHNAMTYNPKGQDVHVMAEQLSNIFEERWPVIESESNPDWRYGMIYDASTPTPTSRKVPHFAHAPPRTLYRSESMTLPFMTRQKPSKFAPPSRTPMPKKPKAKDPNKRNMTYEEKQKLSTNLQSLPSEKLDNIVQIIKKKNTSLSQHDDEIEVDIDSVDIETLWELDRFVTNYKKSLSKHKRKAELAQQARVGAGNANQPMLENLATSLQQAPKENKANEKTLASTLPEQGQRRGDNASRSSSSSSSSSDSGSSSSDSDSDSSSEDGSDAGHSPRS 682
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00430 682 MobiDBLite consensus disorder prediction 303 331 - -
Cati3g00430 682 CDD Bromo-plant1 337 435 IPR037377 -
Cati3g00430 682 Pfam Bromodomain extra-terminal - transcription regulation 516 577 IPR027353 -
Cati3g00430 682 SUPERFAMILY Bromodomain 327 444 IPR036427 GO:0005515(InterPro)
Cati3g00430 682 Coils Coil 135 173 - -
Cati3g00430 682 MobiDBLite consensus disorder prediction 11 28 - -
Cati3g00430 682 MobiDBLite consensus disorder prediction 32 89 - -
Cati3g00430 682 PANTHER OSJNBA0053K19.4 PROTEIN 22 674 - -
Cati3g00430 682 MobiDBLite consensus disorder prediction 299 331 - -
Cati3g00430 682 MobiDBLite consensus disorder prediction 616 682 - -
Cati3g00430 682 Gene3D - 317 445 IPR036427 GO:0005515(InterPro)
Cati3g00430 682 SMART bromo-6 330 440 IPR001487 GO:0005515(InterPro)
Cati3g00430 682 Gene3D - 509 589 IPR038336 -
Cati3g00430 682 ProSiteProfiles Bromodomain profile. 349 421 IPR001487 GO:0005515(InterPro)
Cati3g00430 682 MobiDBLite consensus disorder prediction 616 667 - -
Cati3g00430 682 MobiDBLite consensus disorder prediction 1 89 - -
Cati3g00430 682 Pfam Bromodomain 341 425 IPR001487 GO:0005515(InterPro)
Cati3g00430 682 MobiDBLite consensus disorder prediction 488 515 - -
Cati3g00430 682 PRINTS Bromodomain signature 368 384 IPR001487 GO:0005515(InterPro)
Cati3g00430 682 PRINTS Bromodomain signature 384 402 IPR001487 GO:0005515(InterPro)
Cati3g00430 682 PRINTS Bromodomain signature 402 421 IPR001487 GO:0005515(InterPro)
Cati3g00430 682 PRINTS Bromodomain signature 352 365 IPR001487 GO:0005515(InterPro)
Cati3g00430 682 ProSiteProfiles NET domain profile. 506 587 IPR027353 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00430 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
35554 Cati3g00430 Cati7g03233
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:3651958 Cati7g02700 Cati-Chr7:60854815 dispersed
Cati Cati-Chr1:5383473 Cati3g00430 Cati-Chr3:3651958 transposed
Cati Cati-Chr4:83797628 Cati3g00430 Cati-Chr3:3651958 transposed
Cati Cati-Chr3:3651958 Cati7g03233 Cati-Chr7:69230264 wgd