AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00452 ATGGTGGTTGGAGGTGGTGGTTACCGGTGGCTGTGGTGGCCGGTGGCGGTCGTGGCCGGAGGTGGTGGTGGCTGGTGGCGGTGGACGGAGATGGTGGTGGCAGGCCGGTGGCGATGGTCGGAGGTGGTGGACGCCGGTGGCGGTGGCCGGAGGTGGTGGAGGCCGGTGGCGGTGGCCGGAGGTGGTGGAGGCCGGAGGTGGCCGAAGGTGATGGTGCACATTAGGATGAGGGGCGATTTCGGCGATTACATTGTCGAATACGGCGCCAATTATCGAGCCCTCCCGCCTTTCAACAACCCTTTCCAGCTTTGCTTCTACAACACCACCCCTGACTCATTCACTCTTGCTCTACGTATGGGCACGGTCCGATCCGAATCCCTCATGCGATGGGTCTGGGAAGCCAACCGCGGAAACCCAGTCCGTGAAAACGCCACCCTCACCTTCGCGGCCGACGGCAACCTCGTCCTCGCGGACGCCAACGGCCGGATCGCCTGGCAAACCAACACCGCCGGCAAAGGCATTGTCGGTTTCCAGGTGCTTCCGAATGGTAACATGGTTCTTCACGATGGGAAGGGTAATTTCGTCTGGCAAAGCTTTGACTCGCCGACGGATACCCTTTTGGTGGGTCAGTATCTCCGAGCCGGTGGGCCGAGTCAACTCGTGAGTCGGAGCTCCGAGTTGAGTAACGTCGATGGAGCTTATAGTTTGGTGATGGAACCCAAAGGGCTAGCCTTGTATTACAAGAGCCCTAACGCGGTTCGACCAATGGTATATTGGATGTCGACCGAATGGTTCACTATCGACAAAGGTAGTTTGATCAATTTAACCCTCACGTCCGAACCGTATACCGACGAGGGGTTTATTTATTATTTAACATTCCAATACTTTATGACAAATCCATCGTCAGACTCGAACCGAAACATGGCGTATTCACGATACAATAACACGTTATCGTATCTTCGATTAGGGGTAGATGGGAACCTTAGATTCTTGACGTATAACCCGAATGTGCAAGGCGAATCTTGGGAGGTTATATATACGTTTTTCGATAGGAGATCGATGGAGGGCGAGTGTCAGTTACCAGAAAGATGCGGGAAGTTTGGTTTGTGTGAGGATAGCCAGTGTGTGGCTTGCCCGCGACCCCAAACGGGCTAA 1155 55.06 MVVGGGGYRWLWWPVAVVAGGGGGWWRWTEMVVAGRWRWSEVVDAGGGGRRWWRPVAVAGGGGGRRWPKVMVHIRMRGDFGDYIVEYGANYRALPPFNNPFQLCFYNTTPDSFTLALRMGTVRSESLMRWVWEANRGNPVRENATLTFAADGNLVLADANGRIAWQTNTAGKGIVGFQVLPNGNMVLHDGKGNFVWQSFDSPTDTLLVGQYLRAGGPSQLVSRSSELSNVDGAYSLVMEPKGLALYYKSPNAVRPMVYWMSTEWFTIDKGSLINLTLTSEPYTDEGFIYYLTFQYFMTNPSSDSNRNMAYSRYNNTLSYLRLGVDGNLRFLTYNPNVQGESWEVIYTFFDRRSMEGECQLPERCGKFGLCEDSQCVACPRPQTG 384
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00452 384 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 98 381 IPR051343 -
Cati3g00452 384 Pfam S-locus glycoprotein domain 290 378 IPR000858 GO:0048544(InterPro)
Cati3g00452 384 Gene3D - 89 201 IPR036426 -
Cati3g00452 384 Pfam D-mannose binding lectin 131 212 IPR001480 -
Cati3g00452 384 SMART blect-4 85 202 IPR001480 -
Cati3g00452 384 CDD B-lectin 85 202 IPR001480 -
Cati3g00452 384 ProSiteProfiles Bulb-type lectin domain profile. 82 200 IPR001480 -
Cati3g00452 384 SUPERFAMILY alpha-D-mannose-specific plant lectins 112 249 IPR036426 -
Cati3g00452 384 PIRSF SLG 65 383 IPR035446 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00452 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:3900777 Cati3g00455 Cati-Chr3:3972486 dispersed
Cati Cati-Chr3:3891377 Cati3g00452 Cati-Chr3:3900777 tandem