AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00456 ATGGCTGCTTCTTCTTCTTCTTCTTCATCTCTTTTCCTTATTATCTTCTTTTGCTTCTTGTTTACACTCTTGTTCATCTCCCAAGCCACTGTTCCTCCCTCCGAAACCTTCCGATACGTTAACGAAGGCGAATTCGGCGATTCCGTTGAAAGATCAACCGAATACGACGCATCCTACCGTTCTCTTCCGCTATTCACCACCCCTTTCCGCCTCGCTTTCTACAACACCACCCCCAATGCCTACACTCTCGCTCTTCGCATGGGCATCCGCGGTGACCGATCCCTCGTGCGTTTCGTCTGGGAGGCCAACCGCGGACGCCCCGTTCGCGAAAACGCCACCCTCTCGTTCGGATCCGACGGAAACCTCGTCTTGGCCGAGGCCGACGGCCGGATGGCGTGGCAGACCGACACCGCCAACAAGGGCGTCGTCGGGTTCGCCATCCTCCCCAACGGCAACATCGTGCTTCGCGATGTTGCCGGTAACTTTATCTGGCAGAGCTTCGATTCCCCGACCGACACCCTCTTGTTCGGTCAGAGCCTCCGTGTCGGAGGCCCCAATAAGCTCGTCAGCAGGGCCTCTGTCACGGAGAACGTCAACGGCGCTTACAGCTTCGTGTTGGAGCCCAAACGGTTGGCTTTGTACTACAAGACCACGATGCGTTACTGGTCCGCCGACTTCAACGAGGCCCCCAACGGGGATCCGGTGAACGTGACGCTTGAAATCGGGGAATTCGAATACGTCGACAGCAATTCTAACGCGCTCGTGTTCAATAATGGGGCAACGACTCTATATCTCGACACACTCCTCTACAACAGCACGTTGTCGTATCTCCGGTTGGGAATCGATGGGAATCTGAGACTGTACAGTTATCGTCGGTTTGCGGTTTCGAGCGCGTGGAGACTGTTGTTTACGTTGTTCAGAAGTGGGGTGAGCGAACGGGGGGAGGAAATCGAAGACGAGTGCCAATTACCCGATCGGTGTGGGAAGTTTGGGCTTTGCGAGGACAGCCAATGCGTCGGGTGCCCGTCTCCGAACGGGGTGTTCGCGTGGAGCAAAGATTGCGTTGCGAAGTTGCCGGGTTGTGAGGCGGGTGGTTTTCGTTACTACGAGCTCAAAGGGGTGGACCATTTCACGGTGAAATACGGTACCGGGTCGGGCCCGGTGAGTCGGGAGGCGTGCGAGAGGAAATGCACCAAGGATTGCAAGTGCTTGGGGTATTTCTACCATCCCAAGCAATCCTCCATGCACCCAGCCTATACTGTCACCAATATCCAACAACGAGTCCGTGTTCTCGATGGCGAAAAGATCTCATACCCTTCGTGGGTGAATCTATTTCGACTCCATGCCACCGGGTTTGATGTGTTAAATCACATTGATGGTTCGCCAGCCCCGGAAGCCACATCCGCTGAGTACTCGTCTTGGAAGAAGCTTGACGCAGTCGTGTTGCAATGGATCTACGCAACTCTTTCTGACGACCTCCTTGTCCGAGTTTTGGTCAGCGAGTCTACAGCCTACGAGGCTTGGAAGCGGGTTCAAAACCTCTTTCTGAATAATAAAGGCTCAAGGGCTGCAGCTCTTCAACATGAACTTACCAACTTGACTCTTGCCGCCATGCCCTCTCTTGAAGCCTACTGTCAACGAATCCGTGAGCTTGCAGACCAATTAACTGCTGTAGATTGTCCAATCAACAACACTCAGCGGGTTCTATACCTGGTTCGTGGTTTACCTCGAGAGTACGATGCTGTTGGTTCTCTACTCAATCAGACCCTTCCCTCATGGGAAAATGCATGCGATCAGCTTCAATCTGAGGCCAGACGGATCGCTGCTCGGGAAACCGTCTCCCCGACTCCGGTCGTCGCAGCCGCCATCACAAACCCACCATCGCATCCACCGAACCGTGACAACCGTCGTGCACCCGGGACTCGTCCTCCTGCCCAAATGCCTTTTCCTTATTGGGCTCCCCCACCTTATTGGGCTCCTCCTTGCCCTTACCCAACACAAGGGTGGGCTCAACCTTGGCAGCACATGTCTTCTACATCTCGGCCCACAACTTCTGCTCCAGCCCAACAACCTTCTAGAAGCCCACATGTACAGGCCGAAGCCCACTTAGCTGAGGTTGACCCTCTTCAGCCTACTCAGTTAGCCGATGCAGTCCAAGCTCTCTCCATGGATGCAGGAAACATGGATGATCAATGGGTTTTTGACACGGGTGCGACCTCTCACATTACGAATGATCAAGGTAAACTCTCTACTTTTTCCTCGTATTCACCAATAGAGTCAATATCTGTAGGAGATGGCAATAAAATTCCACTCTGTTTCTACAACACCACCCCCAATGCCTACACTCTCGCGCTTCGGATGGGCACCAGACGCGACCGATCCGTCATGCCGTGGGTCTGGGAAGCCAACCGCAGAGACCCGGTCCGAGAAAACGCCACTTTCTCGTTCGGGTCTGATGGAAACCTCGTCCTGGCCGATGCCGACGGCCGGACCGTATGGCAGACCGAGACCGCCGATAAGGGCGTCGTCGGGTTTGCCATACTCCCGACCGGTAACGTCGTGCTCCGCGACGCTACCGGTCGTTTCGTCTGGCAAAGCTTCGATTCCCCGACCGATACCCTCTTGTTCGGTCAGAGCCTCCGGATCGGAGGCCCCAATAAGCTCGTCAGCAGGGCCTCCGTGACGGAAAACGTCAACGGCGTTTATAGCTTCGTGTTGGATCCTAAACGGTTGGCTTTGTATTACAAGACGATGCGTTACTGGTCGTCCTCGTTCGCCGAAGTCAACAATGCCAACGGGGATTTGGTCAATGCGACTTTAGAAGTTGCGAGAACCGAATATGTCGATAACTATTTTAACTCACTTCGGTGTCGGATGTCGAACTCGGAGGTGGAACCGACTCTGGATCTCGACATACTCCGGTACAACAGCACGTTATCGTACCTACGATTGGGGATCGATGGGAACTTGAGGTTGTTTAGTTATCGGCAAAATACCCGCGGAAACGCGTGGAGTTTGTTGTTCACTTTGTTCGATAGAGGGGTGAGCGAACGTGGGGAGGAGATCGAAGACGAGTGTCAGCTGCCCGATCGGTGCGGGAAGTTCGGGCTTTGCGAGAAGAGCCAGTGCGTCGGGTGCCCAACGCCGGACGGGGTTTTTGCATGGAGCGACAATTGCGTTGCGAAGTTGCCGGGATGTGAGGCCGGTGGTTTTCGTTATTACGAGCTTAAAGGGGTGGACCATTTCACGGTGAAATATAGTGCCGGGACGGGCCCGGTGAAACGGGAGGATTGCGAGAGTAAATGCACCAAGGATTGTCAGTGCTTGGGGTATTTCTATCATACGGATCGGTCGAGGTGTTGGACTGCTAACGAGCTGAAAACGTTGACGAGAGTTGGGAACTCGACTAGTGTTGCATATATCAAAACACCCGTCCGATAA 3441 54.14 MAASSSSSSSLFLIIFFCFLFTLLFISQATVPPSETFRYVNEGEFGDSVERSTEYDASYRSLPLFTTPFRLAFYNTTPNAYTLALRMGIRGDRSLVRFVWEANRGRPVRENATLSFGSDGNLVLAEADGRMAWQTDTANKGVVGFAILPNGNIVLRDVAGNFIWQSFDSPTDTLLFGQSLRVGGPNKLVSRASVTENVNGAYSFVLEPKRLALYYKTTMRYWSADFNEAPNGDPVNVTLEIGEFEYVDSNSNALVFNNGATTLYLDTLLYNSTLSYLRLGIDGNLRLYSYRRFAVSSAWRLLFTLFRSGVSERGEEIEDECQLPDRCGKFGLCEDSQCVGCPSPNGVFAWSKDCVAKLPGCEAGGFRYYELKGVDHFTVKYGTGSGPVSREACERKCTKDCKCLGYFYHPKQSSMHPAYTVTNIQQRVRVLDGEKISYPSWVNLFRLHATGFDVLNHIDGSPAPEATSAEYSSWKKLDAVVLQWIYATLSDDLLVRVLVSESTAYEAWKRVQNLFLNNKGSRAAALQHELTNLTLAAMPSLEAYCQRIRELADQLTAVDCPINNTQRVLYLVRGLPREYDAVGSLLNQTLPSWENACDQLQSEARRIAARETVSPTPVVAAAITNPPSHPPNRDNRRAPGTRPPAQMPFPYWAPPPYWAPPCPYPTQGWAQPWQHMSSTSRPTTSAPAQQPSRSPHVQAEAHLAEVDPLQPTQLADAVQALSMDAGNMDDQWVFDTGATSHITNDQGKLSTFSSYSPIESISVGDGNKIPLCFYNTTPNAYTLALRMGTRRDRSVMPWVWEANRRDPVRENATFSFGSDGNLVLADADGRTVWQTETADKGVVGFAILPTGNVVLRDATGRFVWQSFDSPTDTLLFGQSLRIGGPNKLVSRASVTENVNGVYSFVLDPKRLALYYKTMRYWSSSFAEVNNANGDLVNATLEVARTEYVDNYFNSLRCRMSNSEVEPTLDLDILRYNSTLSYLRLGIDGNLRLFSYRQNTRGNAWSLLFTLFDRGVSERGEEIEDECQLPDRCGKFGLCEKSQCVGCPTPDGVFAWSDNCVAKLPGCEAGGFRYYELKGVDHFTVKYSAGTGPVKREDCESKCTKDCQCLGYFYHTDRSRCWTANELKTLTRVGNSTSVAYIKTPVR 1146
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00456 1146 Pfam D-mannose binding lectin 98 182 IPR001480 -
Cati3g00456 1146 Pfam D-mannose binding lectin 799 882 IPR001480 -
Cati3g00456 1146 ProSiteProfiles PAN-Apple domain profile. 1066 1145 IPR003609 -
Cati3g00456 1146 Gene3D - 771 869 IPR036426 -
Cati3g00456 1146 CDD B-lectin 53 170 IPR001480 -
Cati3g00456 1146 ProSiteProfiles Bulb-type lectin domain profile. 47 168 IPR001480 -
Cati3g00456 1146 ProSiteProfiles Bulb-type lectin domain profile. 746 868 IPR001480 -
Cati3g00456 1146 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 772 1143 IPR051343 -
Cati3g00456 1146 SMART blect-4 53 170 IPR001480 -
Cati3g00456 1146 SMART blect-4 739 870 IPR001480 -
Cati3g00456 1146 MobiDBLite consensus disorder prediction 672 696 - -
Cati3g00456 1146 SUPERFAMILY alpha-D-mannose-specific plant lectins 778 922 IPR036426 -
Cati3g00456 1146 CDD B-lectin 771 870 IPR001480 -
Cati3g00456 1146 CDD PAN-AP-plant 1096 1144 - -
Cati3g00456 1146 FunFam Os04g0303100 protein 790 919 - -
Cati3g00456 1146 Pfam gag-polypeptide of LTR copia-type 474 606 - -
Cati3g00456 1146 SUPERFAMILY alpha-D-mannose-specific plant lectins 94 224 IPR036426 -
Cati3g00456 1146 MobiDBLite consensus disorder prediction 621 645 - -
Cati3g00456 1146 Gene3D - 101 225 IPR036426 -
Cati3g00456 1146 FunFam Os04g0303100 protein 91 221 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00456 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr12:53625141 Cati3g00456 Cati-Chr3:3977481 dispersed
Cati Cati-Chr3:3862668 Cati3g00456 Cati-Chr3:3977481 dispersed
Cati Cati-Chr3:3977481 Cati8g04982 Cati-Chr8:86703803 dispersed
Cati Cati-Chr3:3972486 Cati3g00456 Cati-Chr3:3977481 tandem
Cati Cati-Chr3:3977481 Cati3g00457 Cati-Chr3:3992572 tandem