AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00457 ATGGCTGCTGCTGCTTCTTCTTCTTCTTCATCTCTTTTCCTTATTATCTTCTTCTTTTGCTTCCTGTTTACACTCTTGTTCATCTCCCAAGCCACTGTTCCTCCCTCCGAAACCTTCCGATACGTTAACGAAGGCGAATTCGGCGATTCCGTTGAAAGATCAACCGAATACGACGCATCCTACCGTTCTCTTCCGCTATTCACCACCCCTTTCCGCCTCGCTTTCTATAACACCACCCCCAATGCCTACACTCTCGCTCTTCGCATGGGCATCCGCAGTGACCGATCCCTCGTGCGTTTCGTCTGGGAGGCCAACCGCGGACGCCCCGTTCGCGAAAACGCCACCCTCTCGTTCGGATCCGACGGAAACCTCGTCTTGGCCGAGGCCGACGGCCGGATCGCGTGGCAGACCGACACCGCCAACAAGGGCGTCGTTGGGTTCGCCATCCTCCCCAACGGCAACATCGTGCTACGCGATGCTGCCGGTAATTTCATCTGGCAAAGCTTTGATTCCCCGACCGACACCCTCTTGTACGGTCAGAGCCTCCGTGTCGGAGGCCCCAATAAGCTCGTCAGCAGGGCCTCCGCTACGGAGGCCGTGGACGGCGTATACAGTTTCGTCTTGGAGCCCAAACGGTTGGCTTTGTATTACAAGAAGACGATGCTTTACTGGTCGTCCACGTTCCCCGAAGTCGACAAGGCTAGCGGAGGTTTGGTCAACGCGACGCTAGAGATCGCGGAGGCCGAATACAGCGACGCCAATTACAACTCGCTCCGGTGTCGTATGGCCAACGCCTTTGACGAGCCGACTGTGTTACTCGGTACGAACCGATACAACAGCACGCTTTCGTATCTCCGGTTGGGGATCGATGGGAACCTGAGGCTGTACGGGTACCGTAGAGATGCGAATGCGGCCGCGTGGAGCCTGTTGTTCACTTGGTTCAATAGAGAGTGGACCAACTCGTTGGAGGGGGTCGAGGACGAGTGCCAATTGCCTGATCGGTGCGGGAAGTTTGGGGTTTGCGAGGACAGCCAGTGCGTCGGGTGCCCGACGCCCAAGGGCGTTTTCGCGTGGAGCAAAGATTGCGCTGCCAAGCTGCCGGGATGCCAGGCGAGTGGTTTTCGTTATTACGAGGTCAAAGGGGTGGACCATTTCACGGTGAAATACAGTTCCGGGACGGGCCCGGTGGATCGGAAGGCTTGCGAGAGCAAATGCACCAAGGATTGCAAGTGTTTGGGGCTCTTGAGGTATAACCCGAACTTGCAGAGCACTTCTTGCGAGGTTATATATATGTTTCTCGATAGGGAATTGAGGAAATTGAAGGGTAGCCAGTGTGTGGCTGTTCCGACGTCAAATGGGCTAAGTGGGTGGAATCAGGATTGCGAGTCGAAAAAGGTGACATCTTGTAAGGGTGGTGAGTTTGGATGTTTCAACCCGGAGCTCGGGGTGAATCAGTTCTAG 1461 55.58 MAAAASSSSSSLFLIIFFFCFLFTLLFISQATVPPSETFRYVNEGEFGDSVERSTEYDASYRSLPLFTTPFRLAFYNTTPNAYTLALRMGIRSDRSLVRFVWEANRGRPVRENATLSFGSDGNLVLAEADGRIAWQTDTANKGVVGFAILPNGNIVLRDAAGNFIWQSFDSPTDTLLYGQSLRVGGPNKLVSRASATEAVDGVYSFVLEPKRLALYYKKTMLYWSSTFPEVDKASGGLVNATLEIAEAEYSDANYNSLRCRMANAFDEPTVLLGTNRYNSTLSYLRLGIDGNLRLYGYRRDANAAAWSLLFTWFNREWTNSLEGVEDECQLPDRCGKFGVCEDSQCVGCPTPKGVFAWSKDCAAKLPGCQASGFRYYEVKGVDHFTVKYSSGTGPVDRKACESKCTKDCKCLGLLRYNPNLQSTSCEVIYMFLDRELRKLKGSQCVAVPTSNGLSGWNQDCESKKVTSCKGGEFGCFNPELGVNQF 486
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00457 486 Gene3D - 71 170 IPR036426 -
Cati3g00457 486 ProSiteProfiles Bulb-type lectin domain profile. 49 170 IPR001480 -
Cati3g00457 486 SMART blect-4 55 172 IPR001480 -
Cati3g00457 486 CDD B-lectin 55 172 IPR001480 -
Cati3g00457 486 Pfam D-mannose binding lectin 100 184 IPR001480 -
Cati3g00457 486 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 69 449 IPR051343 -
Cati3g00457 486 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 225 IPR036426 -
Cati3g00457 486 PIRSF SLG 440 478 IPR035446 -
Cati3g00457 486 PIRSF SLG 3 443 IPR035446 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00457 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:3972486 Cati3g00457 Cati-Chr3:3992572 dispersed
Cati Cati-Chr3:3977481 Cati3g00457 Cati-Chr3:3992572 tandem