AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00469 CTGAATAAACACTTGTTTTACTTCCCTAAAACCCTCCTCCCTCTCTCAGTCACCAACTCTCAGAAGATTTGAAATTTTTGAAGAAAAAAGGAAGAAGAAGAAGAAGAAGAAAGATGAGGGAAGAAGAGATCGAGAGGTTGAGAGGAGTCGTCAGAGATTGCGTCAGCAAGCATCTCTACTCCTCGGCGATCTTCTTCGCCGATAAGGTCGTCGCCTTCACCTCCGATCCCGCCGATATCTACATGCAGGCACAAGCCCTATTCCTCGGCCGCCATTACCGCCGTGCTTTCCACCTCCTCAATGCCTCTCAGATCGTCCTCCGTGATCTCCGTTTTCGTTACCTCGCCGCCAAATGCCTCGAGGAACTGAAGGAGTGGGATCAGTGTTTGCTGATGCTTGGAGAAGCTAAGGTGGATGAACATGGAAACTTTAGTGATACCAAGGATTCTAATGTCATGTACCTGGATAAAGACAGCGAGGATCGTGAAATTAATATATCGTCAGCGATATGTTTTCTTAGAGGCAAGGCATATGAGGCTCTGGAGAATCGTTCTCAGGCACGGATGTGGTACAAGGCTGCAATTAGAGCTGATCCTTTATGCTATGAGGCCCTGGAATGTCTTACTGAGAATCACATGCTAACATGTGAAGAAGAGAAAAGTCTTCTTTCATCTCTGCAGTTTGCCCAAGAAGATGGCTGGCTTTCTTCATTCTATTCATGTTTAATAAAAAAGTATGATAAAGCAAGTGTTGTTGAAGACAAATTCAACGAACTTGAGAAAGAAGATATTAGCATAAAACCGTCAAACCAGAACTTGATTTGTACACTAAAAAACAACACAGATCTTTTGGCGTGCAAAGCTGAATACTACCATCAATGTGGTGAATATCAGAAATGCTTTGAATTGACTTCAGTATTGCTTGAGAAGGATCCATTCCATCTTAAAAGTACCATGGTTCATATAGCAGCTGCAATGGAGCTTGGACACTCAAATGAACTCTATCTCATGGCTTGCAACTTAGTTAAGGACTATCCTCAAAACAAGGCCACTAGCTTAGATGGAACATTTGCTCCTGGTTGGATAGGGTATGGAAATGCTTATGCAGCCAAAGAAGAAGGTGACCAAGCTATGTCAGGTTATCGCACTGCTGCTCGTTTATTTCCTGGGTGTCACTTACCTACTTTGTATATCGGAATGGAGTACATGCGAACACACAGCTTCAAACTTGCTGATCAGGCAAAGGCCATATGCCCTTCAGATCCACTTGTATATAATGAACTTGGAGTTGTCGCATATCATATGAAACAGTATAAAAAGGCAGTATGGTGGTTCGAGAAGACTTTGGCTCACATGCCATCACCATTAAGTGAGATGTGGGAATCAACTGTGGTCAATCTCGCTCATTCCTTGAGAAAATTGAAGAGGTACAACGAAGCAATCACTTATTACGAAAAGGCCCTTGCACTGTCGACAAGAAGCTTAAGCACATATGCTGGTTTAGCATACACTTACCATTTGCAGTCTCATGAGCTCATGGCTTCCTTGAAAGGCTGA 1556 43.19 MREEEIERLRGVVRDCVSKHLYSSAIFFADKVVAFTSDPADIYMQAQALFLGRHYRRAFHLLNASQIVLRDLRFRYLAAKCLEELKEWDQCLLMLGEAKVDEHGNFSDTKDSNVMYLDKDSEDREINISSAICFLRGKAYEALENRSQARMWYKAAIRADPLCYEALECLTENHMLTCEEEKSLLSSLQFAQEDGWLSSFYSCLIKKYDKASVVEDKFNELEKEDISIKPSNQNLICTLKNNTDLLACKAEYYHQCGEYQKCFELTSVLLEKDPFHLKSTMVHIAAAMELGHSNELYLMACNLVKDYPQNKATSLDGTFAPGWIGYGNAYAAKEEGDQAMSGYRTAARLFPGCHLPTLYIGMEYMRTHSFKLADQAKAICPSDPLVYNELGVVAYHMKQYKKAVWWFEKTLAHMPSPLSEMWESTVVNLAHSLRKLKRYNEAITYYEKALALSTRSLSTYAGLAYTYHLQSHELMASLKG 480
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00469 480 Pfam Anaphase-promoting complex, cyclosome, subunit 3 19 98 - -
Cati3g00469 480 Gene3D Tetratricopeptide repeat domain 310 475 IPR011990 GO:0005515(InterPro)
Cati3g00469 480 Pfam Tetratricopeptide repeat 132 161 IPR019734 GO:0005515(InterPro)
Cati3g00469 480 Pfam Tetratricopeptide repeat 428 453 IPR013105 -
Cati3g00469 480 PANTHER CELL DIVISION CYCLE 16,23,27 9 471 - GO:0005680(PANTHER)|GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0031145(PANTHER)|GO:0045842(PANTHER)|GO:0051301(PANTHER)
Cati3g00469 480 SMART tpr-5 423 456 IPR019734 GO:0005515(InterPro)
Cati3g00469 480 SMART tpr-5 384 417 IPR019734 GO:0005515(InterPro)
Cati3g00469 480 SMART tpr-5 243 276 IPR019734 GO:0005515(InterPro)
Cati3g00469 480 SMART tpr-5 130 163 IPR019734 GO:0005515(InterPro)
Cati3g00469 480 SMART tpr-5 320 353 IPR019734 GO:0005515(InterPro)
Cati3g00469 480 SUPERFAMILY TPR-like 134 471 IPR011990 GO:0005515(InterPro)
Cati3g00469 480 ProSiteProfiles TPR repeat profile. 423 456 IPR019734 GO:0005515(InterPro)
Cati3g00469 480 SUPERFAMILY TPR-like 40 175 IPR011990 GO:0005515(InterPro)
Cati3g00469 480 Gene3D Tetratricopeptide repeat domain 5 309 IPR011990 GO:0005515(InterPro)
Cati3g00469 480 ProSiteProfiles TPR repeat profile. 384 417 IPR019734 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00469 K03353 anaphase-promoting complex subunit 6
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:4329665 Cati3g00469 Cati-Chr3:4329665 tandem