AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00512 CTAGACACACTTCCTGAATCACCGGAATACCTTTTCCCGCCTTCACATCTTCACCGGAATACCGTTTCCGACTTCAAGCTCACGGCGTCTACCGGAAAGAGAAATCGTTTTTAGAAGAAATCTGGTACGTGAAGAAATCTGCTTATGGAAATTGATTTTGCGAATGCTTAGATTTTCTGTGATGAAGCTCAGTTGATTAGTTTGTGTTATGCTCTGCTTGTTGTTAGTTTGGCTTATCCTCTGTCTTACAACAATAGTACAAACACTGCCAATGAGGTGCAATGCATGCTGGCGGGAGCTGGAAGGGAGAGCCATTTCCACCACGTGTGGTCATATCTTTTGTATCCTAAATTTATCATATTTTGTAGTGAATGGCACGGTGCACAACTAATTTTCCTTAATAGTGTTAAAAGGCAATGAAGATGCCAGTAAGATACTAAGTAGTGATGCAGCTTGCCCGATTTGTGATCAAGTACTTTCTAAAAGCTCTAGAAAAGAAAGTTTACCTTCGTCTCCTCTTATGAGACCCTTAAACTCCCCCTCAAGGTTACGTGGGTGGGAGTGGTAGCATTTTGGCTAAAGACCTCCTGGATATTTGCGAATGTAATTCTCTAATTAGTTGTTGTCGTCCTACAGCCTCATGAAACCTCTGGATATCACCCCAAGTGATGAATGGATAAATATGGCTATGGCTGGCATTTCTCCACAGATACTAATGAAGAGCTCGTATAGAAGTGTGATGTTCTACATTGGACAAAAGGAACTAGAACTTCAGTTCAAGATGAACAGGATAGTAGCTCAATGTCGGGAAAAATGTGAGGCAATGCAAGAGAAGTTCACACAAAAAATGGAGCAGCTGCATACTGCATATCAGAAAATGGCCAAAAGGTGTCAAATGATGGAACAAGAAATTGAAAACTTGTCGAAAGATAAACAGGAACTTCAAGAAAAGTTTTCTGAGAAATCCAGGCAAAAGAGAAAACTGGAAGAGATGTATGATCAGTTGAGAAGTGAGTATGAATCGGTCAAACGTTCTGCCATTCAACCTGCAAACAACTTCTTCTCAAGGGCACAACCTGATCCGTTTGCTAGTCCAGCTAATATGATGGATAATAGAAATTCCATGAGGAAAGATTGGTCGGTTTTCACCCCTGAAACTCCAGGACCTCGCGAAGATATATGGCCACCAGCTACAAGGCAGAACAGTGGTAATTCTGGGCAATTCGACATTTCAGCAATGCCAGTTGAGAACAGAAGACCTGTCGGTGGAGGTGGTGGTGGAGCAAGCAATCCCTCTATGACTTTGAGAAATCTCATATTATCACCAATGAAACGGCCTCAACTCTCTCGTAGCCGACCTCAACTGTTCACGTAA 1375 42.11 MKPLDITPSDEWINMAMAGISPQILMKSSYRSVMFYIGQKELELQFKMNRIVAQCREKCEAMQEKFTQKMEQLHTAYQKMAKRCQMMEQEIENLSKDKQELQEKFSEKSRQKRKLEEMYDQLRSEYESVKRSAIQPANNFFSRAQPDPFASPANMMDNRNSMRKDWSVFTPETPGPREDIWPPATRQNSGNSGQFDISAMPVENRRPVGGGGGGASNPSMTLRNLILSPMKRPQLSRSRPQLFT 244
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00512 244 MobiDBLite consensus disorder prediction 174 221 - -
Cati3g00512 244 Coils Coil 70 132 - -
Cati3g00512 244 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CCNB1IP1 HOMOLOG 1 244 - GO:0051026(PANTHER)
Cati3g00512 244 MobiDBLite consensus disorder prediction 184 198 - -
Cati3g00512 244 SUPERFAMILY Myosin rod fragments 57 131 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00512 K10639 E3 ubiquitin-protein ligase CCNP1IP1 [EC:2.3.2.27]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:5135026 Cati3g00525 Cati-Chr3:5318856 dispersed