AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00556 GTTTTATCTATTACTAATAGAGACTAGTTTTATCTCTTAATTATTCATATGTTATCTATTAATAAAATAGTTATTTTATATATAAATGATTTAAAAAAAAATTATAATATTTTTTAAATTGATAAACATTTGGGAGAAAATAAGCAGGCTTGGAATTCAGATTTCCTTTTTACCCTAGAAAACGTATTCTCTGGTTGATCGTCTGCTCGTTTATCTCCTCCTCTCACAGATATTCTTCCTGTTCCATCAGTTTGATCGGTAAGAAAGAAAGAAAGAAGAGATGGCAGAGAGAAAGGTGTTGAATAAGTATTATCCGCCGGATTTTGATCCGGCAAAGATTCCAAGGAGGCGTATGCCCAAGAATCAACAGATAAAGGTTAGGATGATGCTTCCGATGAGCATTCGCTGCAGCACGTGTGGAAACTACATCTACAAGGGTACCAAGTTCAATTCACGTAAGGAAGACGTTATTGGAGAGACATATCTTGGAATTCAGATATTCAGGTTCTATTTTAAGTGCACCAAGTGCTCAGCTGAGATTACCATGAAGACAGACCCACAAAACTCTGATTATGTTGTTGAGTCTGGAGCTGCTAGAAATTTCGAGCCTTGGCGTGCAGAGGATGAGGTGGTAGATGAGGAGCAAAGAAAACGAGATGCTGAAGAGATGGGAGATGCAATGAGGTCTTTGGAGAATAGAACGCTTGATTCAAAAAGAGAGATGGACATCCTTTCTGCTCTCGATGAAATGAAGTCAATGAAGTCTAGGCATGCTGGTGTAAGTGTAGATGCGATGCTTGAAGCTTTGCAACGCTCAGCTCCTGTGATACAGGAGGACAAGCTTGAAGAAGAGGATGAAGCCCTTATAAAATCCATCTTCCAGGGATCAAAAGAGTTTGTGCGTAGAATTGATGATGATGAGCTCGAAGACGACGATGAACTAACAATTTCGGGCAGTGAAACTTCACAACTTAGTTCTAAGAAGAGGAAGGCAACCGAAGATCGTGCAACAGATTACCTTACGAAAACCAGTACTAGTAGCAAGAGAGAAGTTGAAAGGGGCGGTGGAAGTAGCATTGTTCTTAAGTCTTCGACAGTCAAGTTTTCCGTTGTGAAGAAGGCATCATCAGATGCAAATGTAGAAGAGAAGAAGGCGGAAGTTACAAGTACTACTGGACTACAATCTCTATGCCAACAATATGATACTACTGATGATGAAGAAGAGTAATCAAACCATATTTTGACTGGTAACTGCCAGCTTTTTTTAATATCCTGATGATTGTTTAGACTAGAGAAAGAGAGAATTAATTGGGTTACTGTAATACTGTTTTATGATGAAATTGGAAAGATTTTGAATTTAGTACTTGCCCATTCATATATAATAGGGAAAATAGAAGAATTACATTTACTCTAGAGATGGAGAAACCTGTTACCAAGTATATATCTTAACTGATAGTAATTTGTTTAATTGTTCCATACTACCAGAGGTTTCATTATACTATTTTATTAAAGCTGTATAGCAGTTATCTTGAATTTTTTAAGATACTAGTAGGCTGTACAGCCCTTTATCTCCAAAGCACACAATTGAAACCTAAACCTATCAGTTTCCTCTCCAGTCTCGGCTCCACAATCATCAGAAACCCATCTCTCTCTCCACGTTCAACCCAAATTCCTCTCCTCTCAGCTAAACCTCTATGTTAGTGACATT 1708 37.82 MAERKVLNKYYPPDFDPAKIPRRRMPKNQQIKVRMMLPMSIRCSTCGNYIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTKCSAEITMKTDPQNSDYVVESGAARNFEPWRAEDEVVDEEQRKRDAEEMGDAMRSLENRTLDSKREMDILSALDEMKSMKSRHAGVSVDAMLEALQRSAPVIQEDKLEEEDEALIKSIFQGSKEFVRRIDDDELEDDDELTISGSETSQLSSKKRKATEDRATDYLTKTSTSSKREVERGGGSSIVLKSSTVKFSVVKKASSDANVEEKKAEVTSTTGLQSLCQQYDTTDDEEE 315
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00556 315 PANTHER SPLICING FACTOR YJU2 1 288 IPR007590 GO:0000398(InterPro)|GO:0008380(PANTHER)|GO:0071006(PANTHER)
Cati3g00556 315 MobiDBLite consensus disorder prediction 279 315 - -
Cati3g00556 315 Pfam Saf4-Yju2 protein 9 297 IPR007590 GO:0000398(InterPro)
Cati3g00556 315 MobiDBLite consensus disorder prediction 214 263 - -
Cati3g00556 315 Hamap Splicing factor YJU2 [YJU2]. 1 311 IPR043701 GO:0000398(InterPro)
Cati3g00556 315 MobiDBLite consensus disorder prediction 292 307 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00556 K13115 coiled-coil domain-containing protein 130
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:5553096 Cati3g00556 Cati-Chr3:5553096 dispersed
Cati Cati-Chr3:5553096 Cati3g00556 Cati-Chr3:5553096 dispersed
Cati Cati-Chr3:5553096 Cati3g00556 Cati-Chr3:5553096 tandem