AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00567 CTGATAAAATGTTTTAACTAGTGAGATTGATTAACGAACGAATGTTGAGAAGAAATAGCCTCAGATACATTTACATATAGAGATAGTCTATATATATATATATATATATATATTCAGAGAAAGTTCTGATCGTGTCCCCTCTTCTCCTCTACAAATCTCTCGATCTCCATACCCCCCCCTTAACCCCCTTCCTTCTTTCCTCCTCTCACTCTTTTCCATTTCTCATCATCCAACTTCAAGGATGTTAACGCCATCGACTTTCTTGCTTCAACTACGTCTTTTCTTGTGACCCCCCCAAATTCTATCTGTAAATGGTGAAATTAGAAATTAGGGTTTTGTTACGAAATTGAAGGTTTTTTTAATTTGGTTGGTGGTTTCTGAATGGGGAATAAACTGGGCCGGAGGAGACAGCTAGTGGATGACAAGTATACAAGGCCTCAAGGGCTGTATCAACACAAGGATGTAGATCATAAGAAGCTTCGGAAGCTTATACTTGACTCTAAGCTCGCCCCTTGCTATCCTGGAGACGATGATTGCAGCTGCGATCTTGAAGAATGCCCTATTTGTTTCTTGTATTATCCAAGTCTAAATAGATCAAGATGTTGCACCAAAGGCATTTGTACAGAGTGTTTTCTGCAGATGAAGACACCCAATTCTACTCGTCCTACGCAGTGTCCCTTTTGTAAAACGTTGAACTACGCTGTGGAGTATAGAGGCGTGAAGACGAAAGAGGAAAAAGGGCAGGAGCAAATCGAAGAACAAAGGGTGATAGAAGCAAAAATAAGAATGAGACAGCAAGAAATTCAAGATGAAGAGGAAAGAATGCTAAAAAGGCAAGAGACGGGATCGTCAACCAGGATAATTGAACCAAGTGAGACCGAGTATTTCTCTAGAGCAGTGACATCTTTTTCCGAGGGTGAGGAAATTGTTTCTGTTCCACATCAGGGTGCCACAACAATTAGACATTCTCAACGCTCTAGGGAGAATAGAGATGATGAGTTTGATCTCGACCCAGAAAACATAATGCTTATGGAAGCAATCTGGTTATCATTTCAGGAGGATGGCAAGCACCAAAACCGTAACCCTAATTACGGTGATGCCGCCCAATTAGCAAAATACGCCACAGAAGTTTGTGTTTTGGCATCCATGGCCCCACAGGCAGTAGAGTCGTCATCTTCCACCTCATCACCTTCCGGCGGTCTTGCATGCGCTATAGCCGCCCTTGCGGAACGGCAACAAATGGGCGGAGAATCCTCCGCTAATTACAACAATTACGGTGGGAATATATCGACGTATAATGTCCAGCATCCAACAGGGTTATCACTTGATAACCATCTGGGAATAAGATCGGAGGGAGGGTGGGTTCAAGATTCTTCGGAGATGGGTGGAAATGCATACGGGTATGATAATTCGAACGCGATAGATGATAATGATGGAAACAGATACGGGCAACAAGATGATGGTGATGGTCATAATGATAATGAGATGGAGAATGGTTTTGGTGGAAACGTGGTGGTTCCAGAGAGCTTCGAAGAGCAGATGATGCTAGCCATGGCGGTTTCGCTGGCTGAAGCTCGAGCTAGGACGAGTACACCGGAGGTTGCGTGGATTTAGCGTGTGTGTGTTTTATACGGTATGTAAAACAGGAAAGATATAAAGTGTAGATGATGATGTTTCTTTGAATCAATGGACAGACAGACAGACATATAGAGATTTCAGGGTCTGTATGATTGTTGTTGATGAGGAGATTTGGGTTTGAAAAGTGCAAGTTAATCATCATCATCATCTTTTGCCATAAACTTATATGCATTTGCTCACTAACATTTGTCACTGAATTTGTGTCTTTTTTTTTGCTTTAAAGAACGCAAAAAATCACACCGATGAAC 1886 42.1 MGNKLGRRRQLVDDKYTRPQGLYQHKDVDHKKLRKLILDSKLAPCYPGDDDCSCDLEECPICFLYYPSLNRSRCCTKGICTECFLQMKTPNSTRPTQCPFCKTLNYAVEYRGVKTKEEKGQEQIEEQRVIEAKIRMRQQEIQDEEERMLKRQETGSSTRIIEPSETEYFSRAVTSFSEGEEIVSVPHQGATTIRHSQRSRENRDDEFDLDPENIMLMEAIWLSFQEDGKHQNRNPNYGDAAQLAKYATEVCVLASMAPQAVESSSSTSSPSGGLACAIAALAERQQMGGESSANYNNYGGNISTYNVQHPTGLSLDNHLGIRSEGGWVQDSSEMGGNAYGYDNSNAIDDNDGNRYGQQDDGDGHNDNEMENGFGGNVVVPESFEEQMMLAMAVSLAEARARTSTPEVAWI 410
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00567 410 ProSiteProfiles Zinc finger RING-type profile. 59 102 IPR001841 -
Cati3g00567 410 PANTHER PROTEIN SIP5 1 294 IPR039301 GO:0005737(PANTHER)
Cati3g00567 410 MobiDBLite consensus disorder prediction 344 369 - -
Cati3g00567 410 MobiDBLite consensus disorder prediction 353 367 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00567 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:5725061 Cati5g01400 Cati-Chr5:16780937 dispersed
Cati Cati-Chr3:5725061 Cati3g00567 Cati-Chr3:5725061 tandem