AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00583 ATATCGAAATGTAACCAAAGTTGTTTATTCTTCTTTTTCGATCTGCCATGGCCGCTTCCGGAACCAATACCAACGGATTTCCTGTTAGCGAATCTGTGTGCGCTAGTAATTGGCGACGGCGTTACAACAATCGACCGAAAATTGAAGAAAACAAAGTGCGATTCAATGCGGAATGGTTTATGAATGGCGATTGAGACGATAATTTTAATTTCTTCTTCACATTCATACGCTAATTGTTCGAGAGAAATTGTAGGTTTATAGATTCGAAAATAGTTGCTGATGGTGGAGGTGGATAGTAATGGCGGTGATGAGAAGAGGAACAACAATAATAGCAACAGGTGGAGGCGGTGGGGAGTTTTTGGAGCTCTCATCGCTGTTTTAGTTGCCATATATCTCAATCCTCGGTGGCATAACCACACAATTTCCTTCCTTCATAAACCCTATCTCTGTTCTGAGGATACATGTAAATATACAGGCATTGTTGAGGACTGCTGCTGTGACTATCAAAGCGTTGACGATGTTAATGGAGCAGTTTTAAATATCTTGTTGCAAGAGCTTGTTGCAACTCCTTTCTTCCGATATTTCAAGGTTAAGTTATGGTGTGATTGCCCCTTCTGGCCTGATGATGGTATGTGCCGCCTTCGTGATTGCAGTGTGTGCGAGTGTCCAGAAAATGAATTTCCTGAACCCTTTAAGAAACCGTCTCTGCATATTCTTCCGAAAGATGACCCTGTATGTCAAGAGGGAAAGCCGGAGGCTACTGTTGATCGTACCCTAGATGCTAAATCGTTTAGAGGCTGGGTAGAAATAGATAATCCATGGACTCATGATGATGAAACTGACAATGGTGAAATGACATATGTTAATTTGCAGCTGAACCCTGAACGCCATACAGGTTATGCAGGGCCATCGTCAAGAAGAATATGGGATGCCATATACACAGAAAACTGCCCAAGATATGCATTTGGAGAGATGTGCCCAGAGAAGAAAGTACTATACAAGTTAATATCTGGTCTGCACTCCTCAATTTCAAGCCATATAGCTGCTGATTATCTCCTCGATGAGACTACCAATCAGTGGGGTTCAAATCTTGAATTGATGCATGATCGTGTCCTGAAACATCCTGATCGCGTTCAGAACTTGTACTTCACTTTCCTATTCGTTCTTAGAGCCGTAACAAAAGCAGCTGCTTACTTGGATCAGGCTGAGTATGACTCCGGTAACCATGCGGAGGATCTGAAAGCCCAATCGTTGATACGGCAACTGGTTCACAATCCCAAGTTGCAAGCTGCATGTGCTCTTCCATTTGATGAAGCTGCAATGTGGCAAGGCCAAGGTGGACCCATACTCAGACAACAAACACAAAATCAATTTCGGAACATAAGTGCACTTGTGGACTGTGTTGGGTGCGAGAAGTGTCGTCTTTGGGGAAAGCTTCAGGTTCAGGGCCTTGGAACTGCATTAAAAATTCTTTTCTCTGTGAATGATGAGGGAAACCCACATCTGCAGTTACAAAGAAATGAAGTGATTGCTTTAATTAATCTACTAAATCGGCTATCGGAATCTCTTATATATGTTACTAAAATGGGTTCATCCGCGAATGAAATGCGTTTGTTTCACAGACCATGGGGATCACTCATAGCTCATTGGTGGAAGAAGCTGTTGAGATGTAACTGACCATCGTCAAATCACGTGAAGAGATGTGCCTACACCCATCAAGGGAACGATATCTCATCTTGCCAATGTAATGTGGATCGGTCCGTTCCTTTTTTTTTTGCATGGGCTCGTGCTTTTGAAACTAGAAGAATTACAAGTCTTGTCGAGTCGCAAATGAGCTGCTTTTAGATTAAACTCGGATGCTTAATACTTACAAATTGTGGTCCACTTTTTAACACGTTTCGAGTATTTTCAGAATATCAAATTTACTCTTTACGAATTGTAGTGTTGTTGATTAAGGTTGAAGGTAATAGAAGTGCCTGAAATTCAAATTGTTGATTGTTATTGGCACAACGATACCCCCGGTTATCGGTGGACTTCAATCTCATGAAGTCAAAGGTTTTCTATTGTTGTTTAATTGATAAGAACTAGTTATTAAGAGCCCGGGCTTCGTACCGGGATATAAAATATGATAGATTTATCATAAATAGTAAGAT 2153 41.34 MVEVDSNGGDEKRNNNNSNRWRRWGVFGALIAVLVAIYLNPRWHNHTISFLHKPYLCSEDTCKYTGIVEDCCCDYQSVDDVNGAVLNILLQELVATPFFRYFKVKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPSLHILPKDDPVCQEGKPEATVDRTLDAKSFRGWVEIDNPWTHDDETDNGEMTYVNLQLNPERHTGYAGPSSRRIWDAIYTENCPRYAFGEMCPEKKVLYKLISGLHSSISSHIAADYLLDETTNQWGSNLELMHDRVLKHPDRVQNLYFTFLFVLRAVTKAAAYLDQAEYDSGNHAEDLKAQSLIRQLVHNPKLQAACALPFDEAAMWQGQGGPILRQQTQNQFRNISALVDCVGCEKCRLWGKLQVQGLGTALKILFSVNDEGNPHLQLQRNEVIALINLLNRLSESLIYVTKMGSSANEMRLFHRPWGSLIAHWWKKLLRCN 465
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00583 465 SUPERFAMILY ERO1-like 73 444 IPR037192 -
Cati3g00583 465 Pfam Endoplasmic Reticulum Oxidoreductin 1 (ERO1) 88 431 IPR007266 GO:0005783(InterPro)|GO:0015035(InterPro)|GO:0016972(InterPro)|GO:0034975(InterPro)|GO:0071949(InterPro)
Cati3g00583 465 PIRSF ERO 26 459 IPR007266 GO:0005783(InterPro)|GO:0015035(InterPro)|GO:0016972(InterPro)|GO:0034975(InterPro)|GO:0071949(InterPro)
Cati3g00583 465 PANTHER ERO1-RELATED 31 439 IPR007266 GO:0005783(InterPro)|GO:0005789(PANTHER)|GO:0015035(InterPro)|GO:0015035(PANTHER)|GO:0016972(InterPro)|GO:0034975(PANTHER)|GO:0034975(InterPro)|GO:0071949(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00583 K10950 ERO1-like protein alpha [EC:1.8.4.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:6047796 Cati7g03159 Cati-Chr7:68197270 wgd