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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00605 CAAAAACGTAAAATCTGCGATTTGGCCCCCTTCTCCGATTCTCTTGTTCAACACCCTTCAGAATCCTCAGCGGATCTGCCTTAATGGCTGTTTGCTGAAAATAATGGTAGAAGAAGCTAAAGGAAGTGGCTCATTGAAGTCATTGGCGTAGTTTTTACACAAGTTTTATACATTTGTTTGTTGGTCTAAAGATTGTAGCTTGGGTCATCAAACTGTCAGCACAAGAAGGTATATTTTTATCATGGATTGGAGAGAAAAGCAAGAATGTTTATTATGTAGTAGAGGAGGCAAGCTCTTGGTTTGTAGTGGTGATGGCTGCCCGATATCTGTCCATAAGGATTGCATGGGTTGCGAGGCTCATTTGGATGATGCTGGGAACTTTCACTGTCCTTACTGTGTTTATAGACGACTCACAGCAGAAACTTGTCAACTAAGGGAAAAGGCTATGTTGGCAAAGAAAGCTTTGTCAACTTTCTTAGAGGAACAAATGATAGATGGCAATCACCAGGAGCCAATAGTTGGGTTGGCTAATAAAGATAAACAGATTTTATCAGAAGATAAACTGGTCTGTAATGATGTTCAAAATCAACTTGTCCATTTAGAGAAACATCAAAACTCAAAAACCCGTTTGCCATGTGAAGAAACTCGTGACACCTTCGTATCTGAACAAATTGATGGGTCTCCTAACAGGCCTGGAGAAGTTCTTGGGATAAAAAATGTTAATTCATGTAGGGTGATGGTTGTCTACAAACCAAACTCAAATCTTACCGATGCATGTGGTCTTGATTGCGGTTTACCAAAACAAGACAGGATGAAAGCCGCCCAACTTAAACTAGATGTTACCAAAAGGATCAAAGTTGACAACCGAACCAGAAATCCTAAGCGCAAGTTTAATGGAACTGTTGACAATGAACCGCGTACTACTTCCATAGAAGAAGCAGCACAGTCGAAAAACGCAGGCGTTTCATCATCTGCAAAGAAGCAAAGTACTTGCCAAAAAGAAAACCCTTTTGCAGCATTCAACAAGAATGGAGACCGTACAAAAGAAGAATGCATGAGAGAACATGCAGCAAAAAGATTTGCATCCTTTCGAACTGGTATGCAGTTGCACTCAAAATCTAATAGCAACGTCAATAATGGTAACACTTTCTTGAAAGATCATAGGCATACAAGACAAGAACCAGCCCATTTGTTAAATCATCCAAATGGTACAGCAAAAGGATCTTTAGAAGCCAAGACTGGCACAGAAAGCATTAATGTTGGCAATCGAGGAGTGCTTAAAGATCCTTCTAAGCAGCTGTCAGTGATGGACAGGAGTATAAAACCTAGAGTACTATGGAGTGAAGAAGAAGAAGATATGCTTAAGGAAGGAGTTCAAAGATTCTCACAGTTAACGCGCAAAAACCTTCCTTGGAAGAAAATATTGGAGTTTGGGCATCATGTTTTTGATCCATCCCGCAATCCTTCAGACCTAAAGGATAAGTGGAGGAATATGGCGAAATAGAACTAACAGAAGCCATAACTTTTAGGTTAGTTTAGTGTGAAGATGATCAATTTTTGATCAGATTTTTGTTTTGAGCTTCACCTTTGTGGAAATTTTGGGTTCAAGGAAGCAAGCAAGCTAGATCAACAGCAACTAGTGCACTACTTTTCTTGTATCCCATTCTCTATTACATTTAAGTTTGTAAAGTATTCAGTTTTTGTTCTTGACAATTATATCTTGGTTCACTGCTCATTTAGTTTCTCGATAACATTGTTAGAAATGTACATTCAGTCGTTCAACTCTTTGAGGCGAATGTAAGGTCTGCCTACATTTCACCTTCTCGATAACATTGTTAGAAATGTACATTCAGTTTGTAAAGTATTCAGTTTTTGTTCTTGATGGATAATGGAAGTGTCTCGTTTGTGTTGCACTCAATGAGTTTTTTTTAAGTG 1935 38.76 MDWREKQECLLCSRGGKLLVCSGDGCPISVHKDCMGCEAHLDDAGNFHCPYCVYRRLTAETCQLREKAMLAKKALSTFLEEQMIDGNHQEPIVGLANKDKQILSEDKLVCNDVQNQLVHLEKHQNSKTRLPCEETRDTFVSEQIDGSPNRPGEVLGIKNVNSCRVMVVYKPNSNLTDACGLDCGLPKQDRMKAAQLKLDVTKRIKVDNRTRNPKRKFNGTVDNEPRTTSIEEAAQSKNAGVSSSAKKQSTCQKENPFAAFNKNGDRTKEECMREHAAKRFASFRTGMQLHSKSNSNVNNGNTFLKDHRHTRQEPAHLLNHPNGTAKGSLEAKTGTESINVGNRGVLKDPSKQLSVMDRSIKPRVLWSEEEEDMLKEGVQRFSQLTRKNLPWKKILEFGHHVFDPSRNPSDLKDKWRNMAK 420
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00605 420 PANTHER RING-FYVE-PHD ZINC FINGER SUPERFAMILY PROTEIN 2 420 - -
Cati3g00605 420 MobiDBLite consensus disorder prediction 232 262 - -
Cati3g00605 420 MobiDBLite consensus disorder prediction 232 257 - -
Cati3g00605 420 ProSitePatterns Zinc finger PHD-type signature. 9 52 IPR019786 -
Cati3g00605 420 SMART PHD-3 8 53 IPR001965 -
Cati3g00605 420 CDD SANT-TRF 366 420 - -
Cati3g00605 420 SUPERFAMILY Homeodomain-like 362 419 IPR009057 -
Cati3g00605 420 SUPERFAMILY FYVE-PHD zinc finger 4 64 IPR011011 -
Cati3g00605 420 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 2 93 IPR013083 -
Cati3g00605 420 Pfam Myb-like DNA-binding domain 366 418 - -
Cati3g00605 420 ProSiteProfiles Myb-like domain profile. 366 419 IPR001005 -
Cati3g00605 420 Gene3D - 357 420 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00605 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:6345373 Cati9g04015 Cati-Chr9:86191748 dispersed
Cati Cati-Chr3:6345373 Cati3g00606 Cati-Chr3:6345523 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cati10g00149 . 312 951 PHD Transcription Factor family AT1G05380 44.104 7.86e-168 531.0
Cati10g00385 . 535 975 PHD Transcription Factor family AT5G58610 41.739 1.27e-96 321.0
Cati10g00783 ACH 10 849 PHD Transcription Factor family AT5G58610 30.23 1.24e-97 326.0
Cati10g01175 ACH 319 973 PHD Transcription Factor family AT5G36670 31.287 4.78e-91 303.0
Cati10g02350 . 42 464 PHD Transcription Factor family AT5G57380 37.691 1.90e-91 290.0
Cati11g01169 ACH 608 654 PHD Transcription Factor family AT2G36720 38.462 9.25e-07 45.4
Cati11g01665 . 18 160 PHD Transcription Factor family AT5G58610 26.974 2.90e-10 59.7
Cati11g01832 . 39 264 PHD Transcription Factor family AT5G57380 22.177 9.21e-10 59.7
Cati11g01942 . 615 661 PHD Transcription Factor family AT5G22260 44.681 2.20e-06 50.1
Cati11g01943 . 615 661 PHD Transcription Factor family AT5G22260 44.681 1.55e-06 50.1
Cati11g01944 . 615 661 PHD Transcription Factor family AT5G22260 44.681 2.20e-06 50.1
Cati11g02211 . 253 815 PHD Transcription Factor family AT2G36720 44.174 8.75e-158 482.0
Cati11g02500 . 1542 1704 PHD Transcription Factor family AT5G35210 77.914 1.06e-70 245.0
Cati11g02683 ACH 451 989 PHD Transcription Factor family AT2G36720 42.569 1.91e-141 436.0
Cati12g00890 . 178 997 PHD Transcription Factor family AT4G14920 44.181 0.0 689.0
Cati12g01528 ACH 5 597 PHD Transcription Factor family AT3G24440 47.411 2.53e-178 516.0
Cati12g01986 ACH 3 685 PHD Transcription Factor family AT4G30200 42.653 7.03e-162 476.0
Cati12g01987 ACH 2 685 PHD Transcription Factor family AT4G30200 38.857 3.77e-130 394.0
Cati12g01988 ACH 2 163 PHD Transcription Factor family AT4G30200 51.852 1.44e-34 126.0
Cati12g02119 ACH 26 1020 PHD Transcription Factor family AT5G58610 34.037 1.87e-168 524.0
Cati12g02369 . 563 656 PHD Transcription Factor family AT5G12400 29.167 3.57e-06 48.5
Cati12g02377 ACH 563 656 PHD Transcription Factor family AT5G12400 29.167 2.83e-06 48.9
Cati12g02378 ACH 563 656 PHD Transcription Factor family AT5G12400 29.167 2.83e-06 48.9
Cati12g02902 ACH 367 993 PHD Transcription Factor family AT4G14920 44.531 3.27e-178 555.0
Cati12g03014 ACH 27 160 PHD Transcription Factor family AT5G58610 29.53 6.03e-06 48.5
Cati12g03015 . 27 160 PHD Transcription Factor family AT5G58610 29.53 6.88e-06 48.1
Cati1g00706 ACH 661 814 PHD Transcription Factor family AT5G58610 30.247 5.62e-08 55.8
Cati1g00707 ACH 661 814 PHD Transcription Factor family AT5G58610 30.247 5.95e-08 55.8
Cati1g00978 . 15 661 PHD Transcription Factor family AT5G22260 34.366 4.94e-117 363.0
Cati1g00987 . 42 489 PHD Transcription Factor family AT5G22260 23.913 1.25e-23 102.0
Cati1g01020 . 106 259 PHD Transcription Factor family AT5G22260 29.221 1.61e-15 75.1
Cati1g01025 . 168 403 PHD Transcription Factor family AT5G22260 28.692 7.89e-19 87.0
Cati1g01424 . 130 217 PHD Transcription Factor family AT5G57380 30.097 6.44e-08 53.5
Cati1g03162 . 27 160 PHD Transcription Factor family AT5G58610 25.926 9.05e-07 50.1
Cati2g01506 . 685 753 PHD Transcription Factor family AT4G14920 39.189 1.14e-07 54.3
Cati3g00273 ACH 717 804 PHD Transcription Factor family AT3G14980 33.028 1.52e-07 53.5
Cati3g00440 ACH 537 1027 PHD Transcription Factor family AT3G14980 52.727 7.46e-169 522.0
Cati3g00605 . 606 656 PHD Transcription Factor family AT5G12400 39.623 8.78e-08 52.8
Cati3g00606 . 606 656 PHD Transcription Factor family AT5G12400 39.623 1.85e-07 52.0
Cati3g02593 . 65 663 PHD Transcription Factor family AT5G22260 30.543 6.63e-84 276.0
Cati3g03940 . 544 809 PHD Transcription Factor family AT5G36670 29.242 5.68e-28 114.0
Cati3g03963 . 865 893 PHD Transcription Factor family AT4G14920 58.621 5.27e-06 42.4
Cati3g04088 . 1 1593 PHD Transcription Factor family AT5G12400 37.066 0.0 969.0
Cati4g00268 . 650 699 PHD Transcription Factor family AT5G36670 47.273 2.33e-06 50.4
Cati4g00635 . 29 160 PHD Transcription Factor family AT5G58610 29.545 7.79e-10 53.9
Cati4g02572 . 128 274 PHD Transcription Factor family AT5G57380 23.669 4.36e-10 62.0
Cati4g02573 . 128 274 PHD Transcription Factor family AT5G57380 23.669 4.36e-10 62.0
Cati4g02861 . 130 247 PHD Transcription Factor family AT5G57380 28.788 2.47e-10 62.0
Cati5g00302 . 1 597 PHD Transcription Factor family AT3G24440 38.387 8.64e-113 349.0
Cati5g00303 ACH 1 597 PHD Transcription Factor family AT3G24440 38.486 6.90e-113 349.0
Cati5g00779 . 13 984 PHD Transcription Factor family AT4G14920 43.023 0.0 707.0
Cati5g01562 ACH 7 1025 PHD Transcription Factor family AT3G14980 43.221 0.0 781.0
Cati5g01691 . 865 896 PHD Transcription Factor family AT4G14920 62.5 3.06e-09 50.4
Cati5g01692 . 807 838 PHD Transcription Factor family AT1G05380 62.5 1.66e-09 50.8
Cati5g02609 . 828 938 PHD Transcription Factor family AT1G05380 66.667 1.11e-46 166.0
Cati5g02659 . 145 261 PHD Transcription Factor family AT5G57380 30.469 2.15e-07 50.8
Cati5g02665 . 145 261 PHD Transcription Factor family AT5G57380 30.769 5.30e-08 52.4
Cati5g02666 . 145 261 PHD Transcription Factor family AT5G57380 30.769 5.30e-08 52.4
Cati5g02664 . 145 261 PHD Transcription Factor family AT5G57380 30.769 4.88e-08 52.8
Cati5g02667 . 145 261 PHD Transcription Factor family AT5G57380 30.769 5.50e-08 52.4
Cati5g03016 ACH 1 685 PHD Transcription Factor family AT4G30200 44.215 1.68e-171 504.0
Cati5g03017 ACH 3 685 PHD Transcription Factor family AT4G30200 44.199 1.21e-170 501.0
Cati5g03018 ACH 1 685 PHD Transcription Factor family AT4G30200 44.215 1.68e-171 504.0
Cati6g00342 . 116 973 PHD Transcription Factor family AT2G36720 41.676 0.0 631.0
Cati6g00341 ACH 116 973 PHD Transcription Factor family AT2G36720 41.256 0.0 629.0
Cati6g00398 . 645 744 PHD Transcription Factor family AT5G36670 30.252 1.42e-06 50.4
Cati6g00476 . 172 300 PHD Transcription Factor family AT3G53680 54.264 7.81e-41 156.0
Cati6g00477 ACH 172 300 PHD Transcription Factor family AT3G53680 54.264 7.42e-41 156.0
Cati6g00475 . 172 300 PHD Transcription Factor family AT3G53680 54.264 7.81e-41 156.0
Cati6g00474 . 172 300 PHD Transcription Factor family AT3G53680 54.264 7.42e-41 156.0
Cati6g00478 ACH 172 299 PHD Transcription Factor family AT3G53680 47.02 5.91e-36 142.0
Cati6g00479 . 233 300 PHD Transcription Factor family AT3G53680 57.353 1.02e-24 95.5
Cati7g00806 . 17 407 PHD Transcription Factor family AT5G22260 32.874 6.92e-65 226.0
Cati7g00846 . 15 672 PHD Transcription Factor family AT5G22260 44.248 0.0 526.0
Cati7g01841 . 321 404 PHD Transcription Factor family AT5G22260 39.326 1.15e-06 50.1
Cati7g03227 ACH 525 1033 PHD Transcription Factor family AT3G14980 53.906 0.0 577.0
Cati7g03353 . 29 141 PHD Transcription Factor family AT5G58610 31.304 1.67e-07 47.4
Cati7g03502 ACH 29 160 PHD Transcription Factor family AT5G58610 29.323 1.97e-09 58.5
Cati8g01424 ACH 41 808 PHD Transcription Factor family AT3G53680 52.091 0.0 790.0
Cati8g01425 ACH 41 808 PHD Transcription Factor family AT3G53680 52.638 0.0 809.0
Cati8g02451 ACH 681 760 PHD Transcription Factor family AT4G14920 35.294 6.11e-08 55.8
Cati8g02452 ACH 681 760 PHD Transcription Factor family AT4G14920 35.294 6.60e-08 55.5
Cati9g02052 ACH 717 801 PHD Transcription Factor family AT3G14980 33.028 1.16e-07 54.7
Cati9g02070 ACH 29 160 PHD Transcription Factor family AT5G58610 30.597 1.84e-10 62.0
Cati9g03833 . 161 293 PHD Transcription Factor family AT3G53680 51.128 5.98e-36 139.0
Cati9g03834 . 161 293 PHD Transcription Factor family AT3G53680 51.128 3.95e-36 139.0