AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00611 AGAGAAAGAAAAACCATCACATATTCATAGAAATGGTGAAGCAAAAGGTTGTGGTGAAGGTGACGATGAAGAACGCGAAGAAGTCTCGCAAGGCTATGAAGATCGCTGTTAGCATCTCCGAACAGATAATGGTGACCGGGGAACGAATTGACTCGTTTCAACTAACGTGCTTGCTAAGAAAAAGCGTAGGGCACACAGAGCTCGTGAGTGTTGGTCCAGTAGAGGAGAAGCAACCGCCCAAACCTCAACCTCCCCCCATACCGGCCACCAGTCAAAAGGAGCTGAAGGAAACAGTGCGGTGTGAATGCGTTTGTCGTGAACCGTGCTACGGCTGGCAAGCCGTGCCGTTGCAGGTTATCCATGAAGTCCCTTCCAATACCTGCAGCATCTTGTGA 395 49.87 MVKQKVVVKVTMKNAKKSRKAMKIAVSISEQIMVTGERIDSFQLTCLLRKSVGHTELVSVGPVEEKQPPKPQPPPIPATSQKELKETVRCECVCREPCYGWQAVPLQVIHEVPSNTCSIL 120
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00611 120 PANTHER OS04G0464100 PROTEIN 4 73 IPR044296 -
Cati3g00611 120 Gene3D - 1 66 - -
Cati3g00611 120 MobiDBLite consensus disorder prediction 59 84 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00611 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:6446590 Cati3g00632 Cati-Chr3:6760825 dispersed
Cati Cati-Chr3:6398702 Cati3g00611 Cati-Chr3:6446590 proximal
Cati Cati-Chr3:6446590 Cati3g00613 Cati-Chr3:6524582 proximal
Cati Cati-Chr3:6424086 Cati3g00611 Cati-Chr3:6446590 tandem