AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00667 TTTTTCCTCGCCAATTCCCATTCCTGGGAATGGAGCGGAGACCCCAATCTCCACCCTCGTTCCCGATCCCGTATCGTCATCCCGTTCTCTTTTTCCATCTCCACAGGGGAATTTGATCATATCTCCATCCCCGTTTCCAACGAGGAACGGAGATTCCCAATGGAGAAACGGAGATTTTTTGTTCATTTATATTATTAATTTTAAATTAAATGTTATAAATACCATATTTATTTATATTTTACATATTTTAATAAAAACAAAAAAATATATCATGTAATAATTTATAAACGTAATCATATAATCTTAATTTTCATTTGTTTTTGATTCATGACTCGCTCGAGTCGACTCATTGATTAATCGGTCAAACTCGGTCTTAACAAAACCCAATCCGGTACGGTAGGGTCCACATTCACACCACTGTGCATGCTCTCTGGACAGCCAGTCACCAAACCACCTTCGTAGATTCTCGTGCAGAAAGCACCGGCCATGGCGGTTTCCGGCGACGATAATAACGTATCGTACAATCTCGACTACCGGTCCAAGAAGGATGATGCATGGTACACATCGGCGGTACTTCTGGAAGACGGAAAGCACCTCCGCGTCAAGTTCAGGGACTTCGTGGAGAGCTACTTCGACGAGGTTTTCTCCATCGCCGATTTCTCGACTAAGTCTGAACTACAAGAGTTTCTCCCTAGATTCCGTCGTGTTTCCGTGCCGATAGACGACAATGAGTGCTCCAGAGTGATTGCAGGCATGGCTGTCTGTGCTACTTATAAAGGCGATGGATCGGTTCGATTTTTTGATGCGATTGTTGACGATGTGCATTATAAAGAGCATACTCCTGAGAAGTGTCTATGCACCTATTTACTGGTCTGGCAGCATGGTCCTGAAGAGGGCAATATAACAGCAACAAGTATTGAGGATATATGCCTTATTGTACCTGGTGCTGTTGATCCCAAAGTGACCGACTTTGCAAAGCTTGTGAAGGAAAAACTTGGTTTAGTTTACAAGAGACCATTTTTGTCTAGAAAAACAAGTTCAGACGAAAGTCTTGACGAGATAGGGAGGGGAATATTCCATCGTCAACCAAGTGATCAAGACATAGAGCTGGGAGGTGTCAAAGAAACTGGATGCCATCATTATGTAATATTAGAGAATTTGGAGAAAGATCTATCTCCATCATCAATGATGGAGTTCTTACACGTGCATACTTCAATTACACCACAGGCATATGTTTTTCCAAGCTTGTCAGCAGAAACATATGCAAGAGGAGCAGTTATGGTGGATAGCAGAGCAAAGCTTAAAAGGATATATGACTTTTTAAGCAATCCAAATCACTTCATTGTATCCTCCTCTGGAAGGCCATGGGTGATAGCTGAAGCCAAGCTCAGAACTGGAACTTTTGACACAAACATGCAAAGCTGTATGCCATTGTCTGAGAAAAGAAATATAGGGAGTGGGTTAATGGTCGTGCGATTGGGAACAGAAGAATATAAGAGAGCTAAACAACAAAAAGATCTATATATGGAATTCCGCAAGCATCTAAATGGACTTCTGCAGAGGTTAGATATGGAGGAGAAGAAATGTCTTACTTCTGATATGCAGTTTCTAGTACAGGTAGGAACTGTTTATACCCAGAAGATGGGTCAAAAGGGTAATTATGCTGAAATAGATGATCTTGGTGGAAGTGAGTTTTGGCTAGACAACTTTCGACTCCTCTTCATAAAGTTAGAGATAAATGTCCCTTGTACAATCCTAAAAGACAACCAGTTGTTAGATTCCAAAGTAGGATTTATATTTAATAGGCTACTAGATGAAGTTTTTAAATGTAGACAAATTATGGGTGAATGTGTTGCTGGTGATATTTCTTTGGGCTCAGTTCTTACGAAGCTTAGACAGTTGTATGACGTGGCTACAAGTACTGAGGAAAAACAGTTACTTGACTGGCATTTTGCAAACTTAGAATATGCAAATGCGGGTTACCTTTCACATCTCTCTGTTGCCTATTAG 2010 40.8 MAVSGDDNNVSYNLDYRSKKDDAWYTSAVLLEDGKHLRVKFRDFVESYFDEVFSIADFSTKSELQEFLPRFRRVSVPIDDNECSRVIAGMAVCATYKGDGSVRFFDAIVDDVHYKEHTPEKCLCTYLLVWQHGPEEGNITATSIEDICLIVPGAVDPKVTDFAKLVKEKLGLVYKRPFLSRKTSSDESLDEIGRGIFHRQPSDQDIELGGVKETGCHHYVILENLEKDLSPSSMMEFLHVHTSITPQAYVFPSLSAETYARGAVMVDSRAKLKRIYDFLSNPNHFIVSSSGRPWVIAEAKLRTGTFDTNMQSCMPLSEKRNIGSGLMVVRLGTEEYKRAKQQKDLYMEFRKHLNGLLQRLDMEEKKCLTSDMQFLVQVGTVYTQKMGQKGNYAEIDDLGGSEFWLDNFRLLFIKLEINVPCTILKDNQLLDSKVGFIFNRLLDEVFKCRQIMGECVAGDISLGSVLTKLRQLYDVATSTEEKQLLDWHFANLEYANAGYLSHLSVAY 507
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00667 507 Gene3D - 78 148 - -
Cati3g00667 507 Pfam SAWADEE domain 12 148 IPR032001 GO:0003682(InterPro)
Cati3g00667 507 PANTHER SAWADEE PROTEIN 8 366 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00667 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:7338701 Cati3g00669 Cati-Chr3:7338701 dispersed
Cati Cati-Chr3:7338701 Cati3g00668 Cati-Chr3:7338701 tandem