AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00669 TTTTTCCTCGCCAATTCCCATTCCTGGGAATGGAGCGGAGACCCCAATCTCCACCCTCGTTCCCGATCCCGTATCGTCATCCCGTTCTCTTTTTCCATCTCCACAGGGGAATTTGATCATATCTCCATCCCCGTTTCCAACGAGGAACGGAGATTCCCAATGGAGAAACGGAGATTTTTTGTTCATTTATATTATTAATTTTAAATTAAATGTTATAAATACCATATTTATTTATATTTTACATATTTTAATAAAAACAAAAAAATATATCATGTAATAATTTATAAACGTAATCATATAATCTTAATTTTCATTTGTTTTTGATTCATGACTCGCTCGAGTCGACTCATTGATTAATCGGTCAAACTCGGTCTTAACAAAACCCAATCCGGTACGGTAGGGTCCACATTCACACCACTGTGCATGCTCTCTGGACAGCCAGTCACCAAACCACCTTCGTAGATTCTCGTGCAGAAAGCACCGGCCATGGCGGTTTCCGGCGACGATAATAACGTATCGTACAATCTCGACTACCGGTCCAAGAAGGATGATGCATGGTACACATCGGCGGTACTTCTGGAAGACGGAAAGCACCTCCGCGTCAAGTTCAGGGACTTCGTGGAGAGCTACTTCGACGAGGTTTTCTCCATCGCCGATTTCTCGACTAAGTCTGAACTACAAGAGTTTCTCCCTAGATTCCGTCGTGTTTCCGTGCCGATAGACGACAATGAGTGCTCCAGAGTGATTGCAGGCATGGCTGTCTGTGCTACTTATAAAGGCGATGGATCGGTTCGATTTTTTGATGCGATTGTTGACGATGTGCATTATAAAGAGCATACTCCTGAGAAGTGTCTATGCACCTATTTACTGGTCTGGCAGCATGGTCCTGAAGAGGGCAATATAACAGCAACAAGTATTGAGGATATATGCCTTATTGTACCTGGTGCTGTTGATCCCAAAGTGACCGACTTTGCAAAGCTTGTGAAGGAAAAACTTGGTTTAGTTTACAAGAGACCATTTTTGTCTAGAAAAACAAGTTCAGACGAAAGTCTTGACGAGATAGGGAGGGGAATATTCCATCGTCAACCAAGTGATCAAGACATAGAGCTGGGAGGTGTCAAAGAAACTGGATGCCATCATTATGTAATATTAGAGAATTTGGAGAAAGATCTATCTCCATCATCAATGATGGAGTTCTTACACGTGCATACTTCAATTACACCACAGGCATATGTTTTTCCAAGCTTGTCAGCAGAAACATATGCAAGAGGAGCAGTTATGGTGGATAGCAGAGCAAAGCTTAAAAGGATATATGACTTTTTAAGCAATCCAAATCACTTCATTGTATCCTCCTCTGGAAGGCCATGGGTGATAGCTGAAGCCAAGCTCAGAACTGGAACTTTTGACACAAACATGCAAAGCTGTATGCCATTGTCTGAGACACATCATTTCCCCTCTTTCCTGTTTATTCTTTATTTATTTTTGACCCCCTGCTACTCCCAATCCCAGAAAAGAAATATAGGGAGTGGGTTAATGGTCGTGCGATTGGGAACAGAAGAATATAAGAGAGCTAAACAACAAAAAGATCTATATATGGAATTCCGCAAGCATCTAAATGGACTTCTGCAGAGGTTAGATATGGAGGAGAAGAAATGTCTTACTTCTGGTGCAAATTAG 1677 41.68 MAVSGDDNNVSYNLDYRSKKDDAWYTSAVLLEDGKHLRVKFRDFVESYFDEVFSIADFSTKSELQEFLPRFRRVSVPIDDNECSRVIAGMAVCATYKGDGSVRFFDAIVDDVHYKEHTPEKCLCTYLLVWQHGPEEGNITATSIEDICLIVPGAVDPKVTDFAKLVKEKLGLVYKRPFLSRKTSSDESLDEIGRGIFHRQPSDQDIELGGVKETGCHHYVILENLEKDLSPSSMMEFLHVHTSITPQAYVFPSLSAETYARGAVMVDSRAKLKRIYDFLSNPNHFIVSSSGRPWVIAEAKLRTGTFDTNMQSCMPLSETHHFPSFLFILYLFLTPCYSQSQKRNIGSGLMVVRLGTEEYKRAKQQKDLYMEFRKHLNGLLQRLDMEEKKCLTSGAN 396
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00669 396 PANTHER SAWADEE PROTEIN 8 389 - -
Cati3g00669 396 Gene3D - 78 148 - -
Cati3g00669 396 Pfam SAWADEE domain 12 148 IPR032001 GO:0003682(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00669 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:7338701 Cati3g00669 Cati-Chr3:7338701 dispersed
Cati Cati-Chr3:7338701 Cati3g00669 Cati-Chr3:7338701 tandem