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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00694 AAGATAAAGAAATAAAATAATAAATCAACTCAGATTTTTTGCCCTTTTAGAGAGAATATAGTTCTATATTGACCTTATCTTATTTATGTTCTTAAAGCTACTATCTTTTTCTCTAGAAGAGAATCGAATTCGAATCATAGAGGGGATTTTGTGAAGGAAAAAAAAAATGTCATCTAAATCAACCAGCAGAACCCATTGTTCAAGAAGCAGTTCTTCAAGATTGAAACGAGATGCTAAAAGGGTTTCACAGACCCCAATTGATGCCAAGCTCCATGGCGATTTCGAAGAATCCGAAAGGCTCTTTGATTACTCGACCTCCATTGATGTCAATGCTTCAACCTCAACCAGCAATGTCCCGTCTTCGACTGTTGTTTCGGCCTATCTCCAAAAGATGCAGAGGGGAAGCCAAATCCAGCCTTTCGGCTGCGTGATCGCCATTGATGACCAGACCTTGAACGTGTTGGCTTACAGCGAGAACGCCCTCGAGATGCTCGACTTATCGCCTCACGCGGTCCCGAGCATCGAGCAGCAAGAGGCGTTGACGTTCGGGACGGATGTCCGTACGCTTTTCCGGTCGTCGGGCGCTTCCGCGCTCCAAAAAGCGGCGAATTTCGTCGAGGTTAATCTCCTGAACCCGATACTGGTTCATTGCCGGAGCTCGGGGAAGCCGTTTTACGCGATCTTGCATCGGAACGATGTGGGTTTGGTTATCGATTTGGAGCCGGTGAATCCCGCGGACGTCCCCGTGACGGCCGCGGGAGCTTTGATGTCGTATAAGCTCGCGGGGAAATCGATTTCGAGGTTGCAATCGTTGCAGAGCGGGAATATATCTCGAATGTGCGATGTGTTGGTTCGGGAAGTGAGCGAGTTAACGGGTTACGATCGGGTTATGGTGTATAAGTTTCATGAGGACGAGCACGGTGAGGTCGTAGCCGAGTGTCGGAAGCCGGATCTCGAGCCGTATCTCGGCTTGCATTATCCGGCTACCGATATCCCGCAAGCTTCGAGGTTTCTTTTTATGAAGAACAAAGTGAGGATGATTTGTGATTGTTCGGCTGCACCGGTGAAGGTGGTCCAATCGAAGAATTTGGCTCAGCCATTGAGTCTTGCTGGCTCGGCTTTACGAGCTCCTCACGGGTGTCACGCGCAATACATGGCTAATATGGGCTCGATCGCGTCCCTTGTGATGTCTGTAACGATCAACGATGGTGATGATGACGATGAGGATGAGAACGAGTCCGAAAGTGGGATCGATCAGCAACAAAAACAAAAGGGGAAACGATTATGGGGTTTGGTCGTTTGCCATCATTCAACGGCTCGATTCGTACCGTTTCCGTTGAGGTACGCATGCGAGTTCTTGATCCAAGTTTTCAGTGTTCAGATCAACAAAGAAGTCGAGTTAACCGCCCAACTACGTGAAAAACACCTCTTGAAAATGCAAACCGTTCTCTGCGATATGCTTCTGCGAGACGCACCGGTCGGGATCTTCACGCAATCGCCGAACGTGATGGATCTCGTTACGTGCGACGGAGCCGCGTTATACTACAAAAACAAGTTTTGGCTGCTCGGGACCACCCCGACCGAGGCCCAAATCCGAGATATCGCGAACTGGCTTCTCGAAGAACACTTGGGGAGCACGGGGTTGAGCACTGATAGCCTCGTGGACGCCGGATACCCGCATGCTTCGGTTCTTGGAAAAGCGGTGTGCGGGATGGCGGCTGCCAAGATTACCTCGAGAGATTTCCTTTTTTGGTTCCGGTCCCATACGGCCAAGGAAGTGAAATGGGGTGGGGCCAAACACGATCCGGAAGATAAAGACGACGGGAGAAAGATGCATCCGAGGTCGTCTTTCAAGGCGTTTTTGGAGGTGGTTAAGAATCGGAGTTTGCCATGGGAAGATGTGGAGATGGATGCGATCCATTCGTTACAGTTGATACTGAGGGGATGTTTGCAAGATGATGGTGAAGAGACGGGTGGTGACGATGATAAGAAGATTGTGAGCGTTCCAGCCGTGGATACGAGCATTCAGAGGGTTAATGAGCTGCGGGTTGTGGCTAATGAAATGGTTCGGCTTATTGAGACGGCTTCGGTTCCTATATTTGCGGTTGATGGGAATGGGAATATTAGTGGTTGGAATGATAAAATAGCTGAGCTTACTGGAGTGCCTTTGGAGCAAGCTGTTGGTGTCCCTTTAGTCGAAATGGTTACCGATGATTCGGTTGATGAAGTCAAAGCTATGGTCTCCTCTGCTTTAGAAGAAACAAATGATCGCATTACCCTGGTTACTAACGCTTGTTGTAGCCGTGATCTGAACGAAAGCATCGTAGGGGTATGCTTCATCGGACAAGATCTAACGGCTAAAAAGTTAATCACGGACAAATATACGAAAGTCAAAGGCGATTACGCTAGTATCGTGCGTAGCCCGTGTGCCCTTATTCCGCCGATTTTCATGATGGACGAGTACGGAAAATGCGTGGAATGGAATGATGCCATGCAAAAATTAACCGGTTTGCAGAGGGAAGAAGCCAAGAACCGAATGCTCCTTGGTGAAGTTTTCACCGTTGGAGGTTTTGGTTGTCGGGTCAAAGGCGAAGATACTTTGACCAGGCTTAGAATACGACTAAACGAGGTGATTTCAGGCTTGGATGCAGATAAGATGATGTTCGGTTTCTTTGACCAAAACGGAAAGTCTGTCGAAGCGTTACTTTCCGCTAACAAAAGGGTCGACGGAGACGGAAATATTACGGGGGTTTTGTGCTTTTTACATGTGACGAGCCCTGAGCTTCAACACGCGATGATGGTGCAACGAATGTCTGAGCAGGCTGCGTTTAATAGCCTCACGAAGGTGACTTATTTGCGGCATGAACTCAAGAGTAGTTTAAACGGGATCAAATGTATCGAGGATTTGATGGATTCGTCGGAATTGGGAAGAGAGCAGAGACATATTCTGCGTAAGAGCCATTTGTGTCGAGAACAATTAGCGCAGATCGTCAACGATGCGGATATTGAAAGCATCGAGGAATGTTATATGGAAATGAAATGTGCTGAATTCAAACTCGGTGAGTCGTTGGAGGTAGTTTTGAATCAAGCAACGAGTCTGAGTCGTGAGCGGAAGGTGGAGGTCGTGTATGATGCACCCGATCAAGTGTTATCGTTGTATGTATTTGGTGACAACTTGAGGCTTCAACAAGTCCTTTCGGATTTCTTGTCAAGTGCTCTAAATTTCACTCCGACTTTAGAAGGATCTTCGGTTCTATTTCGCGTAACTCACAGGATGGAACACATCGGAGCCAAAATACAAGTCGCCCATCTTGAATTCAGGATTACCCATCCGGCACCGGGGATCCCGGAGAAGTTGATTCAGGATATGTTTCACCACAACCGAAGTGCGTCGAGAGAAGGGCTTGGACTTTACATCAGCCAAAAGCTCGTTAAGATCATGAACGGAACCGTACAGTATCTTAGGGAGGCCGAGAGAGCGTCTTTCATCGTTTTGATTGAGCTTCCGGTGGCACCGTCATTGACTTCCGACAACAAACGATCGAAGAGAACCTGAAAACCGAAAGAAACGTTTTTCGGGATTGTGCAGAAATGGGTGATTGATGAATCAACTGTATGTGTAACTGCTACCTTTTTTTTTTAATTTTGTACAGGAAAAAGGGGGGATGATAAAGAGTTTGAAGCTCACAAATTTCTTTGTACCAAATTTTGAATTGTTGTTTATGATATACGAGTCTTGTACCATTCTTTCTGCCCCCTCTTTTTTTAATGTAATAGGGTTATAAGTTTGGAACGATGAAGTCAAGAGTGTTGTGGCGGATTGATTATCGTTCGGTGGGTTCATAGCGCTCTAACCGAGTTCGAGCCTTTCCGTGCGCATGTCGGGCTATGTTTAGCCCCCAAAATTGCCGGGGATTAGGCGGGCTTTGGCCCGGACACCCTTCAAAAAAAAAGTTTGGAACGATAAAATCCTAATAATTATTTTAAATCATCATTAGAAGTCTTTACAGAAACAGTTGTTACATATTTTGAGATAAATTTATATCTAT 4049 46.73 MSSKSTSRTHCSRSSSSRLKRDAKRVSQTPIDAKLHGDFEESERLFDYSTSIDVNASTSTSNVPSSTVVSAYLQKMQRGSQIQPFGCVIAIDDQTLNVLAYSENALEMLDLSPHAVPSIEQQEALTFGTDVRTLFRSSGASALQKAANFVEVNLLNPILVHCRSSGKPFYAILHRNDVGLVIDLEPVNPADVPVTAAGALMSYKLAGKSISRLQSLQSGNISRMCDVLVREVSELTGYDRVMVYKFHEDEHGEVVAECRKPDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCSAAPVKVVQSKNLAQPLSLAGSALRAPHGCHAQYMANMGSIASLVMSVTINDGDDDDEDENESESGIDQQQKQKGKRLWGLVVCHHSTARFVPFPLRYACEFLIQVFSVQINKEVELTAQLREKHLLKMQTVLCDMLLRDAPVGIFTQSPNVMDLVTCDGAALYYKNKFWLLGTTPTEAQIRDIANWLLEEHLGSTGLSTDSLVDAGYPHASVLGKAVCGMAAAKITSRDFLFWFRSHTAKEVKWGGAKHDPEDKDDGRKMHPRSSFKAFLEVVKNRSLPWEDVEMDAIHSLQLILRGCLQDDGEETGGDDDKKIVSVPAVDTSIQRVNELRVVANEMVRLIETASVPIFAVDGNGNISGWNDKIAELTGVPLEQAVGVPLVEMVTDDSVDEVKAMVSSALEETNDRITLVTNACCSRDLNESIVGVCFIGQDLTAKKLITDKYTKVKGDYASIVRSPCALIPPIFMMDEYGKCVEWNDAMQKLTGLQREEAKNRMLLGEVFTVGGFGCRVKGEDTLTRLRIRLNEVISGLDADKMMFGFFDQNGKSVEALLSANKRVDGDGNITGVLCFLHVTSPELQHAMMVQRMSEQAAFNSLTKVTYLRHELKSSLNGIKCIEDLMDSSELGREQRHILRKSHLCREQLAQIVNDADIESIEECYMEMKCAEFKLGESLEVVLNQATSLSRERKVEVVYDAPDQVLSLYVFGDNLRLQQVLSDFLSSALNFTPTLEGSSVLFRVTHRMEHIGAKIQVAHLEFRITHPAPGIPEKLIQDMFHHNRSASREGLGLYISQKLVKIMNGTVQYLREAERASFIVLIELPVAPSLTSDNKRSKRT 1129
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00694 1129 SMART gaf-1 220 420 IPR003018 GO:0005515(InterPro)
Cati3g00694 1129 SMART pas-2 744 814 IPR000014 -
Cati3g00694 1129 SMART pas-2 631 697 IPR000014 -
Cati3g00694 1129 FunFam Phytochrome 954 1115 - -
Cati3g00694 1129 Gene3D - 933 1109 IPR036890 -
Cati3g00694 1129 SUPERFAMILY PYP-like sensor domain (PAS domain) 634 725 IPR035965 -
Cati3g00694 1129 SUPERFAMILY PYP-like sensor domain (PAS domain) 76 189 IPR035965 -
Cati3g00694 1129 NCBIfam PAS domain S-box protein 759 865 IPR000014 -
Cati3g00694 1129 NCBIfam PAS domain S-box protein 636 700 IPR000014 -
Cati3g00694 1129 SUPERFAMILY PYP-like sensor domain (PAS domain) 759 864 IPR035965 -
Cati3g00694 1129 CDD PAS 756 867 IPR000014 -
Cati3g00694 1129 PIRSF Phytochrome-conventional 2 1124 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Cati3g00694 1129 Gene3D - 201 571 IPR029016 -
Cati3g00694 1129 SUPERFAMILY GAF domain-like 418 596 - -
Cati3g00694 1129 MobiDBLite consensus disorder prediction 347 367 - -
Cati3g00694 1129 PRINTS Phytochrome signature 135 157 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cati3g00694 1129 PRINTS Phytochrome signature 558 576 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cati3g00694 1129 PRINTS Phytochrome signature 235 254 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cati3g00694 1129 PRINTS Phytochrome signature 525 544 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cati3g00694 1129 PRINTS Phytochrome signature 707 724 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cati3g00694 1129 PRINTS Phytochrome signature 727 747 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cati3g00694 1129 PRINTS Phytochrome signature 320 341 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cati3g00694 1129 PRINTS Phytochrome signature 440 460 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cati3g00694 1129 MobiDBLite consensus disorder prediction 15 34 - -
Cati3g00694 1129 CDD PAS 640 697 IPR000014 -
Cati3g00694 1129 Gene3D PAS domain 77 323 - -
Cati3g00694 1129 ProSiteProfiles PAS repeat profile. 629 699 IPR000014 -
Cati3g00694 1129 Pfam GAF domain 222 409 IPR003018 GO:0005515(InterPro)
Cati3g00694 1129 Gene3D - 415 588 IPR043150 -
Cati3g00694 1129 Pfam PAS fold 745 867 IPR013767 GO:0006355(InterPro)
Cati3g00694 1129 Pfam PAS fold 632 704 IPR013767 GO:0006355(InterPro)
Cati3g00694 1129 MobiDBLite consensus disorder prediction 1 34 - -
Cati3g00694 1129 Gene3D PAS domain 758 873 - -
Cati3g00694 1129 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 220 400 IPR016132 -
Cati3g00694 1129 PANTHER OS08G0260000 PROTEIN 1 691 - -
Cati3g00694 1129 SUPERFAMILY ATPase domain of HSP90 chaperone-DNA topoisomerase II-histidine kinase 963 1114 IPR036890 -
Cati3g00694 1129 ProSiteProfiles PAS repeat profile. 742 797 IPR000014 -
Cati3g00694 1129 SMART HKATPase-4 1001 1115 IPR003594 -
Cati3g00694 1129 Pfam Phytochrome region 423 596 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cati3g00694 1129 SUPERFAMILY GAF domain-like 209 407 - -
Cati3g00694 1129 Gene3D PAS domain 617 733 - -
Cati3g00694 1129 FunFam Phytochrome 415 547 - -
Cati3g00694 1129 ProSitePatterns Phytochrome chromophore attachment site signature. 320 329 IPR013516 -
Cati3g00694 1129 ProSiteProfiles Histidine kinase domain profile. 896 1117 IPR005467 -
Cati3g00694 1129 CDD HATPase-Phy-like 1000 1113 IPR044767 -
Cati3g00694 1129 Pfam PAS fold 71 187 IPR013654 GO:0006355(InterPro)
Cati3g00694 1129 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1001 1115 IPR003594 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00694 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr3:7541517 Cati6g00063 Cati-Chr6:335346 dispersed
Cati Cati-Chr3:7541248 Cati3g00694 Cati-Chr3:7541517 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cati10g01343 . 73 1118 Histidine Kinase gene family AT2G47430 36.205 0.0 575.0
Cati11g02955 . 49 1157 Histidine Kinase gene family AT2G18790 75.178 0.0 1749.0
Cati11g02954 ACH 49 1157 Histidine Kinase gene family AT2G18790 75.586 0.0 1745.0
Cati12g00764 . 1 1119 Histidine Kinase gene family AT1G09570 73.727 0.0 1790.0
Cati1g00753 ACH 27 1200 Histidine Kinase gene family AT2G17820 61.43 0.0 1444.0
Cati1g02324 . 5 1096 Histidine Kinase gene family AT4G18130 57.362 0.0 1323.0
Cati2g00788 . 1 883 Histidine Kinase gene family AT5G10720 55.463 0.0 987.0
Cati2g00789 ACH 1 331 Histidine Kinase gene family AT5G10720 53.235 2.11e-116 357.0
Cati2g02154 . 489 546 Histidine Kinase gene family AT2G01830 82.759 6.36e-27 101.0
Cati3g00694 . 3 1110 Histidine Kinase gene family AT5G35840 59.982 0.0 1431.0
Cati3g00693 . 3 1110 Histidine Kinase gene family AT5G35840 59.982 0.0 1431.0
Cati3g03312 ACH 4 921 Histidine Kinase gene family AT5G10720 59.408 0.0 1077.0
Cati4g02857 . 73 1055 Histidine Kinase gene family AT2G01830 63.582 0.0 1238.0
Cati4g02858 . 73 1055 Histidine Kinase gene family AT2G01830 57.114 0.0 1063.0
Cati4g02859 . 73 549 Histidine Kinase gene family AT2G01830 57.862 1.36e-174 516.0
Cati4g02860 . 546 1052 Histidine Kinase gene family AT2G01830 56.061 0.0 549.0
Cati5g02315 . 516 636 Histidine Kinase gene family AT2G01830 41.322 7.81e-16 69.3
Cati5g02316 . 516 636 Histidine Kinase gene family AT2G01830 41.322 7.81e-16 69.3
Cati5g02317 . 516 636 Histidine Kinase gene family AT2G01830 41.322 7.81e-16 69.3
Cati5g02320 . 713 798 Histidine Kinase gene family AT2G01830 48.837 2.87e-20 92.4
Cati5g02318 . 516 636 Histidine Kinase gene family AT2G01830 41.322 7.81e-16 69.3
Cati5g02319 . 516 636 Histidine Kinase gene family AT2G01830 41.322 7.81e-16 69.3
Cati6g00062 . 960 1035 Histidine Kinase gene family AT2G18790 31.579 7.93e-07 46.2
Cati6g00063 ACH 39 1152 Histidine Kinase gene family AT2G18790 76.054 0.0 1803.0
Cati7g00817 . 106 1056 Histidine Kinase gene family AT2G01830 65.911 0.0 1236.0
Cati7g00818 . 106 1056 Histidine Kinase gene family AT2G01830 65.911 0.0 1236.0
Cati8g02480 . 13 415 Histidine Kinase gene family AT2G17820 65.133 0.0 541.0
Cati8g02479 ACH 13 1197 Histidine Kinase gene family AT2G17820 63.905 0.0 1535.0
Cati8g02478 . 13 415 Histidine Kinase gene family AT2G17820 65.133 0.0 541.0
Cati8g02477 . 13 1197 Histidine Kinase gene family AT2G17820 62.838 0.0 1499.0
Cati8g02476 . 13 415 Histidine Kinase gene family AT2G17820 65.133 0.0 541.0
Cati8g03236 . 186 241 Histidine Kinase gene family AT2G01830 64.286 3.87e-18 75.1
Cati8g03237 . 256 377 Histidine Kinase gene family AT2G01830 40.984 1.43e-19 85.1
Cati8g03238 . 256 377 Histidine Kinase gene family AT2G01830 49.18 7.10e-29 112.0
Cati8g03239 . 256 377 Histidine Kinase gene family AT2G01830 40.984 1.45e-19 85.1
Cati8g03240 . 182 241 Histidine Kinase gene family AT2G01830 66.667 1.78e-20 82.8
Cati9g02640 . 489 607 Histidine Kinase gene family AT2G01830 51.24 2.07e-29 108.0
Cati9g02996 . 489 622 Histidine Kinase gene family AT2G01830 49.265 2.17e-30 115.0
Cati9g02997 . 489 622 Histidine Kinase gene family AT2G01830 49.265 2.17e-30 115.0