AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00700 CACATTCCTTCATATAACCAAACCCATTTATATCATCCTTTCTTGTTTGATCAAATCAAAGTAAAATAATCTTTTGCTTGCATGGCTACACAATTCAATCCATGTTCTTCTTCATCTTCCACCACCACCTTCCCCTTCCCACCTTGTAATTCACTTAATCAAGAAACCTTTTCTTGTGGAAAATTCTCAACAAAATCCTTCAATCCCTCCAGGTGGGTTTTCAAGATTCACTCCAGAATCAATCCCAAAAACCAGTTTGAACTCAAATCCTCAAATGGGTATCCTCTTAATGCAATCTCCTTGCAGGATGGTGCTGCAAATAAGCCTCTGGCAAAAGAGCTTGTGTTACCAGAAAAAACCGAATCGAATCTTAGTGTAACCGTTGTGGGTGCTTCGGGCGATCTTGCAAAGAAAAAGATTTTTCCAGCCCTTTTTGCTCTCTTTTATGAAGATTGTTTACCTCAGAATTTTATTATATTCGGTTATGCCCGAACCAAAATGACCGATGAGGAGCTAAGGGAGATGATTAGTAGAACGTTAACTTGCAGAATCGATAAGAGAGAGAACTGTGGTGACAAAATGGATGAGTTTCTTGAAAGATGCTTTTACCATTCGGGTCAATACAACTCCGAGGAACATTTTGCGGAATTGGACAGCAAGCTGCAACAGAAAGAGGGTGGAAAAGTGTCGAATAGGTTGTTTTACTTGTCGATACCTCCAGACATTTTTGTGGATGTGGTACGATGTGCCAGTGGCAAAGCTTCTTCCAAGAACGGGTGGACAAGGGTAATTGTGGAAAAACCATTTGGCCGCGATGCACAATCATCTGGAGAGCTAACCAGAAGCCTCAAGCGCCACTTAGCTGAGGATCAAATCTTCAGGATTGATCATTACTTGGGGAAGGAGCTCGTGGAGAATCTATCGGTTCTTCGTTTCTCAAATCTTGTTTTCGAACCACTTTGGTCAAGAAACTACATTCGCAATGTGCAATTCATATTTTCTGAAGATTTTGGTACAGAAGGGCGAGGAGGATACTTTGATAACTATGGAATCATCCGTGATATAATGCAAAACCACCTCCTTCAAATATTAGCGTTGTTCGCCATGGAAACACCCGTGACTTTGGATGCCGAGGACATCAGGAATGAAAAGGTTAAAGTTTTGAGATCGATGAGACAACTGCGGCTTGAAGATGTAGTGATCGGGCAATACAAAGGGCATAGCAAGGGCGGAAAGACGCATTTAGGATACACAGAGGACCCAACTGTGCCAAACGATAGCCTCACTCCAACTTTTGCAGCAGCCGCACTCTTCATCGATAACGCCCGGTGGGATGGCGTTCCGTTTCTTATGAAAGCCGGCAAGGCCCTCGATACTAGACGGGCAGAGATCAGAGTTCAATTCAGACATGTTCCAGGTAATCTATACAAGCGAAACTTTGGAACGGATTTGGACAAGGCCACGAACGAGCTCGTACTCCGTGTGCAGCCTGATGAAGCCATTTATCTCAAGATCAATAACAAGCTTCCTGGTCTCGGGATGAGGCTTGATCGCAGCGACCTTAATTTGCTCTACAGTACGAGGTATTCGAAAGAAATCCCGGATGCATACGAGCGGCTTCTGTTGGATGCGGTAGAAGGAGAGCGGAGATTGTTCATAAGAAGTGACGAGCTTGATGCTGCGTGGTCTATATTCACGCCATTGTTGAAAGAACTCGAAACCAAGAAGATTGCACCGGAGTTGTACCCGTATGGCAGCAGGGGACCCGTCGGAGCGCATTATCTGGCGGCAAATTACAATGTCCGGTGGGGTGATCTCGCCGGTGATGACTGATTTTACATGTACATGTGCTATATTTTGTCAATTTTAAATACTTCTTCCTCAGTTCAAAAATAAGCGTCTACATTTTTTTATTTCGGTCTGTCCCAAAATAGGTGCACGTTTTCAAATGGAGATGTCGACTTTCCGATCTTACTCCAAATCATTAAGGGTAAAATTGTACTTTGTTTTTCATAATAGACATTTATTTTGGGACCGAG 2039 43.31 MATQFNPCSSSSSTTTFPFPPCNSLNQETFSCGKFSTKSFNPSRWVFKIHSRINPKNQFELKSSNGYPLNAISLQDGAANKPLAKELVLPEKTESNLSVTVVGASGDLAKKKIFPALFALFYEDCLPQNFIIFGYARTKMTDEELREMISRTLTCRIDKRENCGDKMDEFLERCFYHSGQYNSEEHFAELDSKLQQKEGGKVSNRLFYLSIPPDIFVDVVRCASGKASSKNGWTRVIVEKPFGRDAQSSGELTRSLKRHLAEDQIFRIDHYLGKELVENLSVLRFSNLVFEPLWSRNYIRNVQFIFSEDFGTEGRGGYFDNYGIIRDIMQNHLLQILALFAMETPVTLDAEDIRNEKVKVLRSMRQLRLEDVVIGQYKGHSKGGKTHLGYTEDPTVPNDSLTPTFAAAALFIDNARWDGVPFLMKAGKALDTRRAEIRVQFRHVPGNLYKRNFGTDLDKATNELVLRVQPDEAIYLKINNKLPGLGMRLDRSDLNLLYSTRYSKEIPDAYERLLLDAVEGERRLFIRSDELDAAWSIFTPLLKELETKKIAPELYPYGSRGPVGAHYLAANYNVRWGDLAGDD 583
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00700 583 Gene3D - 93 267 - -
Cati3g00700 583 FunFam Glucose-6-phosphate 1-dehydrogenase 93 267 - -
Cati3g00700 583 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 93 282 IPR036291 -
Cati3g00700 583 Pfam Glucose-6-phosphate dehydrogenase, C-terminal domain 282 576 IPR022675 GO:0004345(InterPro)|GO:0006006(InterPro)|GO:0050661(InterPro)
Cati3g00700 583 ProSitePatterns Glucose-6-phosphate dehydrogenase active site. 269 275 IPR019796 GO:0004345(InterPro)|GO:0006006(InterPro)
Cati3g00700 583 Pfam Glucose-6-phosphate dehydrogenase, NAD binding domain 101 279 IPR022674 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Cati3g00700 583 Coils Coil 350 370 - -
Cati3g00700 583 PRINTS Glucose-6-phosphate dehydrogenase signature 416 442 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Cati3g00700 583 PRINTS Glucose-6-phosphate dehydrogenase signature 311 328 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Cati3g00700 583 PRINTS Glucose-6-phosphate dehydrogenase signature 259 287 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Cati3g00700 583 PRINTS Glucose-6-phosphate dehydrogenase signature 235 248 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Cati3g00700 583 PRINTS Glucose-6-phosphate dehydrogenase signature 329 345 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Cati3g00700 583 FunFam Glucose-6-phosphate 1-dehydrogenase 268 577 - -
Cati3g00700 583 NCBIfam glucose-6-phosphate dehydrogenase 97 576 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Cati3g00700 583 PANTHER GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD 93 575 IPR001282 GO:0004345(PANTHER)|GO:0006006(InterPro)|GO:0006006(PANTHER)|GO:0009051(PANTHER)|GO:0009570(PANTHER)|GO:0016614(InterPro)|GO:0050661(InterPro)
Cati3g00700 583 Gene3D Dihydrodipicolinate Reductase; domain 2 268 577 - -
Cati3g00700 583 Hamap Glucose-6-phosphate 1-dehydrogenase [zwf]. 96 578 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Cati3g00700 583 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 269 576 - -
Cati3g00700 583 PIRSF G6PD 84 580 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00700 K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cati Cati-Chr1:451005 Cati3g00700 Cati-Chr3:7632997 dispersed
Cati Cati-Chr3:7632997 Cati4g03367 Cati-Chr4:92298634 dispersed
Cati Cati-Chr3:7632997 Cati4g03366 Cati-Chr4:92298634 transposed